https://github.com/jbferet/biodivMapR

biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images
https://github.com/jbferet/biodivMapR

biodiversity diversity-mapping hyperspectral-imaging remote-sensing sentinel-2 tropical-forest

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biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images

• Host: GitHub
• URL: https://github.com/jbferet/biodivMapR
• Owner: jbferet
• License: gpl-3.0
• Created: 2019-09-04T18:53:25.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2024-09-23T08:01:18.000Z (9 months ago)
• Last Synced: 2024-10-29T22:31:39.764Z (8 months ago)
• Topics: biodiversity, diversity-mapping, hyperspectral-imaging, remote-sensing, sentinel-2, tropical-forest
• Language: R
• Homepage: https://jbferet.github.io/biodivMapR/index.html
• Size: 99.2 MB
• Stars: 45
• Watchers: 9
• Forks: 13
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• open-sustainable-technology - biodivMapR - An R package for α- and β-diversity mapping using remotely-sensed images. (Biosphere / Biodiversity Analysis and Metrics)

README

        
# __biodivMapR__ 

# An R package for α- and β-diversity mapping using remotely-sensed images

[![build](https://img.shields.io/github/actions/workflow/status/jbferet/biodivMapR/tic.yml?branch=master)](https://github.com/jbferet/biodivMapR/actions)

[![licence](https://img.shields.io/badge/Licence-GPL--3-blue.svg)](https://www.r-project.org/Licenses/GPL-3)

[![version](https://img.shields.io/github/v/release/jbferet/biodivMapR?label=version)](https://github.com/jbferet/biodivMapR)

[![version](https://img.shields.io/conda/vn/conda-forge/r-biodivmapr)](https://anaconda.org/conda-forge/r-biodivmapr)

# 1 Install

The package `remotes` first needs to be installed from the CRAN

```

install.packages("remotes")

```

Then some packages which were removed from the CRAN may need to be installed directly from authors' repository. This is the case for `dissUtils`: 

```

remotes::install_github('cran/dissUtils')

```

After installing `remotes`and `dissUtils`, `biodivMapR` should be ready for installation with the following command line in your R session:

```

remotes::install_github('jbferet/biodivMapR')

```

# 2 Tutorial

A tutorial vignette is available [here](https://jbferet.github.io/biodivMapR/articles/biodivMapR.html).

The corresponding script is available in file `examples/tutorial.R`.

# 3 Citation

If you use **biodivMapR**, please cite the following references:

Féret, J.-B., de Boissieu, F., 2019. biodivMapR: an R package for α‐ and β‐diversity mapping using remotely‐sensed images. Methods Ecol. Evol. 00:1-7. https://doi.org/10.1111/2041-210X.13310

Féret, J.-B., Asner, G.P., 2014. Mapping tropical forest canopy diversity using high-fidelity imaging spectroscopy. Ecol. Appl. 24, 1289–1296. https://doi.org/10.1890/13-1824.1

# 4 Acknowledgments / Fundings

This research was supported by the Agence Nationale de la Recherche ([ANR](https://anr.fr/en/open-calls-and-preannouncements/), France) through the young researchers project **BioCop** (ANR-17-CE32-0001)