https://github.com/jsta/dataflowchl

Improved estimation of phytoplankton abundance and fine-scale water quality features via simultaneous discrete and semi-continuous surveys
https://github.com/jsta/dataflowchl

estuaries florida-bay manuscript research-compendium water-quality

Last synced: about 2 months ago
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Improved estimation of phytoplankton abundance and fine-scale water quality features via simultaneous discrete and semi-continuous surveys

• Host: GitHub
• URL: https://github.com/jsta/dataflowchl
• Owner: jsta
• Created: 2017-01-14T23:12:42.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2022-08-01T17:52:53.000Z (over 2 years ago)
• Last Synced: 2024-06-11T17:07:40.113Z (8 months ago)
• Topics: estuaries, florida-bay, manuscript, research-compendium, water-quality
• Language: TeX
• Homepage:
• Size: 35.9 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.Rmd

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README

        
---

title: ""

output: github_document

---

```{r setup, include=FALSE}

knitr::opts_chunk$set(echo = TRUE)

```

# Code for _Stachelek et al. (2017)_

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.839334.svg)](https://doi.org/10.5281/zenodo.839334)

**Jemma Stachelek, Christopher J. Madden, Stephen Kelly, Michelle Blaha (submitted)**. Improved estimation of phytoplankton abundance and fine-scale water quality features via simultaneous discrete and semi-continuous surveys.

## Dependencies

### R packages

```{r echo=FALSE}

knitr::kable(data.frame(packages1 = c("DataflowR", "raster", "ggplot2", 

                                     "dplyr", "ggrepel"), 

                        packages3 = c("ggsn", "maptools", "cowplot",

                                      "viridis", "sp"), 

                        packages2 = c("remake", "gdalUtils", "sf", 

                                     "fitdistrplus", "GGally"), 

                        packages4 = c("knitr", "kableExtra", "magrittr", 

                                      "gstat", "ggjoy")), 

             col.names = c("", "", "", ""))

```

## Data

**Christopher J. Madden, Jemma Stachelek, Stephen Kelly, Michelle Blaha (2017)** Florida Bay water quality estimated by underway flow-through measurement. _KNB Data Repository_. [http://dx.doi.org/10.5063/F11R6NGR](http://dx.doi.org/10.5063/F11R6NGR)

## Build

Building the figures, tables, and manuscript has been streamlined with [GNU make](http://kbroman.org/minimal_make/). See the items defined as build targets by running the following line in the terminal:

`$ make help`

```{bash echo=FALSE}

make help_no_color

```