Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

https://github.com/jtsuvile/awesome-healthcare-datascience

A repository for awesome resources for teams and individuals working on implementing data science in a healthcare context
https://github.com/jtsuvile/awesome-healthcare-datascience

List: awesome-healthcare-datascience

Last synced: 16 days ago
JSON representation

A repository for awesome resources for teams and individuals working on implementing data science in a healthcare context

Awesome Lists containing this project

README 

        
# Awesome resources for Data Science in the healthcare sector, with emphasis on single-payer healthcare systems

A repository for awesome resources for data science teams and individual data scientists working on implementing data science in a healthcare context. Some of the content is specifically for Nordic context, but a great deal is generally applicable. 



Have a good resource that is not here? Make a pull request!



# Organisations, networks and communities



- [NHS R community](https://nhsrcommunity.com/)

- [NHS Python community](https://nhs-pycom.net/)

- [Nordic Research Software Engineers](https://nordic-rse.org/)

- [Locally Optimistic Slack](https://locallyoptimistic.com/community/)

- [AI Nordics Discord Server](https://my.ai.se/resources/1014)

- [Network for data scientists working in the Swedish public healthcare sector](https://aicc-sahlgrenska.github.io/data_scientist_network/)



# Videos

- [Applied AI sessions with Unity Health](https://youtube.com/playlist?list=PL13Svr4qEzK7L5mgD0aLfdLN162cjuhSk&si=XhcPZuFSN33SrmMp), organised by AI Sweden

- [Videos from NHS R & Python communities' conferences and workshops](https://www.youtube.com/channel/UCMwM-3tg_-Pbx8hKO78q5EA)

- [Videos from old Health and Care Analytics conferences](https://www.youtube.com/@HACA_Conference)

- [Videos from R/Medicine conferences](https://www.youtube.com/@RConsortium) (look for playlists with R Medicine or R/Medicine in the name)

- [Posit hangouts](https://posit.co/past-hangouts/) sometimes feature fantastic Life Science guests, e.g. [this one with guests from Unity Health](https://posit.co/data-science-hangout/57-derek-beaton/)



# Podcasts

- [Vanishing Gradients](https://vanishinggradients.fireside.fm/)

- [An episode of the AI Sweden podcast on productionizing AI in healthcare with guests from Unity Health](https://open.spotify.com/episode/00UdMfRTBzYFufQIhY2RiY?si=d8a1087f5b60485f)



# Repositories

- [Monai](https://github.com/Project-MONAI) is a toolkit for medical image analysis developed by NVIDIA and King’s College London

- [Cyclops](https://github.com/VectorInstitute/cyclops) is a toolkit for research and development of AI models in healthcare developed by Vector Institute

- [NHS R community](https://github.com/nhs-r-community) 

- [NHS Python community](https://github.com/nhs-pycom) 

- [NHSX](https://github.com/nhsx) 

- [Clinical Scientific Computing at Guy's and St Thomas' NHS Foundation Trust](https://github.com/GSTT-CSC) 



# Open source datasets

- [PhysioNet](https://physionet.org/about/database/) contains a large number of datasets with physiological origin. One of the more famous datasets there is [MIMIC-IV](https://physionet.org/content/mimiciv/2.2/) dataset on intensive care visits

- [AIDA data hub](https://datahub.aida.scilifelab.se/) is a Swedish repository for medical imaging data

- Many [Kaggle](https://www.kaggle.com/) competitions have health-related datasets

- Many lists of healthcare datasets floating around the internet, search e.g. "awesome healthcare dataset"



# Conferences

- [Healthcare NLP Summit](https://www.nlpsummit.org/), is a fully digital conference related to all kinds of NLP tasks within the healthcare sector.

- [R/Medicine](https://rconsortium.github.io/RMedicine_website/) is a conference all about using the language R in medical research and in pharma. Fully online, usually in June.

- [Health and Care analytics conference](https://haca-conference.nhs.uk/), mainly for and by the NHS. Organised somewhere in the UK, usually in July, with option to join in online.

- [Machine learning for healthcate](https://www.mlforhc.org/) is a mostly academic conference related to ML applications within the healthcare domain. Organised somewhere in the North America in August-September.

- [A joint conference for NHS R and Python user communities, RPySOC](https://nhsrcommunity.com/events). Organised usually in Birmingham, sometime in November, with option to join in online.



# Ethical AI

- [Guidelines for ethical AI in public sector](https://www.suomi.fi/guides/responsible-ai)

- [Yle's (Finnish public broadcasting company) principles for responsible AI](https://yle.fi/aihe/s/10005660)

- [Deon](https://deon.drivendata.org/), an ethics checklist for data science projects in the form of a command line tool



# More resources

- [Blog by Data Science and Advanced Analytics group at Unity Health Toronto](https://lks-chart.github.io/blog/)

- Lots of resources and links over at [Clinical Scientific Computing at Guy's and St Thomas' NHS Foundation Trust](https://gstt-csc.github.io/)

- [DevOps for Data Science book](https://do4ds.com/)

- Many resources over at [Vector Institute](https://vectorinstitute.ai/research/health-research/), e.g. [Health AI Implementation Toolkit](https://vectorinstitute.ai/health-ai-implementation-toolkit/)

- Blog about Data Science tools and technologies with daily articles https://blog.dailydoseofds.com/

- An in-the-works book about times when data science does not go as planned [Science Fictions](https://calmcode.io/data-science-fiction) - chapter 1 talks about data leakage in a health care use case



# Resources in Swedish language

- [AI och maskininlärning för kliniker](https://play.lnu.se/media/t/0_9gldbzgn) (in Swedish!)

- [Artificiell intelligens inom vård och omsorg](https://play.lnu.se/media/t/0_mzti4jou) (in Swedish!)

- [AI och bröstcancer](https://play.lnu.se/media/t/0_wteryemf) (in Swedish!)

- [The AI Sweden podcast](https://open.spotify.com/show/7z6xGzWQosx3346tpscfQc?si=000d80c8fbc44813) often has episodes relating to healthcare, for example this one about [data science in health care sector](https://open.spotify.com/episode/3xj4kt85j3QVYfvVbyeuFX?si=a6bba0ed855447eb) and this one about  [how Unity Health works on AI in healthcare](https://open.spotify.com/episode/0Zz5CFJtWE1vR3XBlvQQbC?si=ddca8c1fd1a0427e).