https://github.com/karrlab/wc_sandbox

A public jupyter notebook server for live documentation of karr lab packages
https://github.com/karrlab/wc_sandbox

Last synced: 7 months ago
JSON representation

A public jupyter notebook server for live documentation of karr lab packages

• Host: GitHub
• URL: https://github.com/karrlab/wc_sandbox
• Owner: KarrLab
• License: mit
• Created: 2018-05-16T00:22:04.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2020-10-29T21:01:13.000Z (over 5 years ago)
• Last Synced: 2025-06-25T22:07:55.701Z (8 months ago)
• Language: Python
• Size: 373 KB
• Stars: 1
• Watchers: 8
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
[![PyPI package](https://img.shields.io/pypi/v/wc_sandbox.svg)](https://pypi.python.org/pypi/wc_sandbox)

[![Documentation](https://readthedocs.org/projects/wc_sandbox/badge/?version=latest)](https://docs.karrlab.org/wc_sandbox)

[![Test results](https://circleci.com/gh/KarrLab/wc_sandbox.svg?style=shield)](https://circleci.com/gh/KarrLab/wc_sandbox)

[![Test coverage](https://coveralls.io/repos/github/KarrLab/wc_sandbox/badge.svg)](https://coveralls.io/github/KarrLab/wc_sandbox)

[![Code analysis](https://api.codeclimate.com/v1/badges/c8e5e44b6d9b957ef0ec/maintainability)](https://codeclimate.com/github/KarrLab/wc_sandbox)

[![License](https://img.shields.io/github/license/KarrLab/wc_sandbox.svg)](LICENSE)

![Analytics](https://ga-beacon.appspot.com/UA-86759801-1/wc_sandbox/README.md?pixel)

# WC-Sandbox: Jupyter playground for whole-cell modeling

WC-Sandbox is a collection of Jupyter notebooks for learning about whole-cell modeling. The sandbox is available at [https://sandbox.karrlab.org](https://sandbox.karrlab.org).

## Installation

1. Install dependencies

    * [Pip](https://pip.pypa.io) >= 18.0

    * [Python](https://www.python.org) >= 3.6

    * Requirements for individual WC modeling tools. See [An Introduction to Whole-Cell Modeling](http://docs.karrlab.org/intro_to_wc_modeling/master/0.0.1/installation.html).

2. Install this package 

    * Install the latest release from PyPI

      ```

      pip install wc_sandbox

      ```

    * Install the latest revision from GitHub

      ```

      pip install git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils

      pip install git+https://github.com/KarrLab/wc_sandbox.git#egg=wc_sandbox

      ```

## Examples, tutorial, and documentation

Please see the [documentation](https://docs.karrlab.org/wc_sandbox).

## License

The package is released under the [MIT license](LICENSE).

## Development team

This package was developed by the [Karr Lab](https://www.karrlab.org) at the Icahn School of Medicine at Mount Sinai in New York, USA.

## Questions and comments

Please contact the [Karr Lab](mailto:info@karrlab.org) with any questions or comments.