https://github.com/khanlab/tar2bids

https://github.com/khanlab/tar2bids

Last synced: 6 months ago
JSON representation

• Host: GitHub
• URL: https://github.com/khanlab/tar2bids
• Owner: khanlab
• License: gpl-3.0
• Created: 2018-01-28T03:46:00.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2025-07-23T15:14:12.000Z (about 1 year ago)
• Last Synced: 2025-07-23T17:25:37.810Z (about 1 year ago)
• Language: Python
• Size: 295 KB
• Stars: 7
• Watchers: 1
• Forks: 9
• Open Issues: 7
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# tar2bids

```

Runs dicom tarball(s) to BIDS conversion using heudiconv

Usage tar2bids     

 Assumes tar files are generated by cfmm2tar or dicom2tar (to find PatientName)

 If this is not the case, please use the -T option.

 Optional flags (must appear before required arguments):

	-P  :  default:  *_{subject}

	-T  :  uses tarfile name instead of PatientName to search, e.g. '{subject}' if .tar

	-o  : default=./bids

	-N  : default=0  (max cores)

	-h  : default=cfmm_bold_rest.py

	-w   (--tempdir in heudiconv)

	-O "" : default=

 Available heuristic files:

	cfmm_base.py

	cfmm_bold_rest.py

	cfmm_PS_PRC_3T.py

	EPL14A_GE_3T.py

	EPL14B_3T.py

	GEvSE.py

  ```