https://github.com/kitwaremedical/2019-imagexd-registration-tutorial
https://github.com/kitwaremedical/2019-imagexd-registration-tutorial
Last synced: 9 months ago
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- Host: GitHub
- URL: https://github.com/kitwaremedical/2019-imagexd-registration-tutorial
- Owner: KitwareMedical
- License: apache-2.0
- Created: 2019-08-15T19:13:49.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2019-09-23T14:40:37.000Z (almost 7 years ago)
- Last Synced: 2025-06-05T16:07:59.834Z (about 1 year ago)
- Language: Jupyter Notebook
- Size: 15.5 MB
- Stars: 6
- Watchers: 11
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# 2019-ImageXD-Registration-Tutorial
## Super Quickstart
[](https://mybinder.org/v2/gh/KitwareMedical/2019-ImageXD-Registration-Tutorial/master)
## Quickstart
```sh
git clone https://github.com/KitwareMedical/2019-ImageXD-Registration-Tutorial
cd 2019-ImageXD-Registration-Tutorial
python -m pip install -r requirements.txt
jupyter notebook
```
## Format
The tutorial consists of lecture segments followed by hands-on
exercises. We *strongly encourage* you to bring a laptop with all
required packages installed in order to fully participate.
## Software required
- **Python**
If you are new to Python, please install the
[Anaconda distribution](https://www.continuum.io/downloads) for
**Python version 3** (available on OSX, Linux, and Windows).
Everyone else, feel free to use your favorite distribution, but
please ensure the requirements below are met:
- `python` >= 3.6
- `numpy` >= 1.12
- `scipy` >= 1.0
- `matplotlib` >= 2.1
- `scikit-image` >= 0.15
- `itk` >= 5.0.1
- `itkwidgets` == 0.18
- **ITK**
ITK is an open-source toolkit for multidimensional image analysis.
If you are using Anaconda, it is easy to install ITK using the
[conda-forge](https://conda-forge.org/) repository, through the
following command:
`$ python -m pip install itk`
- **Jupyter**
The lecture material includes Jupyter notebooks. Please follow the
[Jupyter installation instructions](http://jupyter.readthedocs.io/en/latest/install.html),
and ensure you have version 4 or later:
```bash
$ jupyter --version
4.4.0
```
Please also activate Jupyter Widgets:
```
python -m pip install -q ipywidgets
jupyter nbextension enable --py --sys-prefix itkwidgets widgetsnbextension
```
## Download lecture material
1. [Install Git](https://git-scm.com/downloads)
2. Clone the repository at [https://github.com/KitwareMedical/2019-ImageXD-Registration-Tutorial](https://github.com/KitwareMedical/2019-ImageXD-Registration-Tutorial)
We may make editorial corrections to the material until the day before
the workshop, so please execute `git pull` to update.
## Install into an environment
Optionally, create a new conda environment or virtual environment.
Then, install the packages:
`$ python -m pip install -r requirements.txt`
**If you do not have a working setup, please contact the instructors.**