https://github.com/kullrich/treeswitchr

TreeSwitchR visualize phylogenetic trees along chromosomes in R
https://github.com/kullrich/treeswitchr

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TreeSwitchR visualize phylogenetic trees along chromosomes in R

• Host: GitHub
• URL: https://github.com/kullrich/treeswitchr
• Owner: kullrich
• License: other
• Created: 2024-05-05T09:37:59.000Z (6 months ago)
• Default Branch: devel
• Last Pushed: 2024-05-14T12:23:35.000Z (6 months ago)
• Last Synced: 2024-05-15T14:26:53.075Z (6 months ago)
• Language: R
• Size: 54.7 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

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README

        
# TreeSwitchR

`TreeSwitchR` visualize phylogenetic trees along chromosomes in R.

Given a tree file and the corresponding genomic positions, trees are visualized and compared to their corresponding neighbors. Tree topology switches as well as their underlying genomic features are highlighted.

## Installation instructions

Get the latest stable `R` release from

[CRAN](http://cran.r-project.org/). Then install the `TreeSwitchR` development version from

[GitHub](https://github.com/kullrich/TreeSwitchR) with:

``` r

devtools::install_github("kullrich/TreeSwitchR", dependencies = TRUE)

```

## Code of Conduct - Participation guidelines

This repository adhere to [Contributor Covenant](http://contributor-covenant.org) code of conduct for in any interactions you have within this project. (see [Code of Conduct](https://github.com/kullrich/TreeSwitchR/blob/master/CODE_OF_CONDUCT.md))

See also the policy against sexualized discrimination, harassment and violence for the Max Planck Society [Code-of-Conduct](https://www.mpg.de/11961177/code-of-conduct-en.pdf).

By contributing to this project, you agree to abide by its terms.