https://github.com/kullrich/treeswitchr
TreeSwitchR visualize phylogenetic trees along chromosomes in R
https://github.com/kullrich/treeswitchr
Last synced: 10 months ago
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TreeSwitchR visualize phylogenetic trees along chromosomes in R
- Host: GitHub
- URL: https://github.com/kullrich/treeswitchr
- Owner: kullrich
- License: other
- Created: 2024-05-05T09:37:59.000Z (about 2 years ago)
- Default Branch: devel
- Last Pushed: 2024-05-14T12:23:35.000Z (about 2 years ago)
- Last Synced: 2025-02-13T17:29:01.553Z (over 1 year ago)
- Language: R
- Size: 54.7 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
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README
# TreeSwitchR
`TreeSwitchR` visualize phylogenetic trees along chromosomes in R.
Given a tree file and the corresponding genomic positions, trees are visualized and compared to their corresponding neighbors. Tree topology switches as well as their underlying genomic features are highlighted.
## Installation instructions
Get the latest stable `R` release from
[CRAN](http://cran.r-project.org/). Then install the `TreeSwitchR` development version from
[GitHub](https://github.com/kullrich/TreeSwitchR) with:
``` r
devtools::install_github("kullrich/TreeSwitchR", dependencies = TRUE)
```
## Code of Conduct - Participation guidelines
This repository adhere to [Contributor Covenant](http://contributor-covenant.org) code of conduct for in any interactions you have within this project. (see [Code of Conduct](https://github.com/kullrich/TreeSwitchR/blob/master/CODE_OF_CONDUCT.md))
See also the policy against sexualized discrimination, harassment and violence for the Max Planck Society [Code-of-Conduct](https://www.mpg.de/11961177/code-of-conduct-en.pdf).
By contributing to this project, you agree to abide by its terms.