https://github.com/lgatto/rpx

R Interface to the ProteomeXchange Repository
https://github.com/lgatto/rpx

bioconductor data mass-spectrometry proteomexchange proteomics

Last synced: about 2 months ago
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R Interface to the ProteomeXchange Repository

• Host: GitHub
• URL: https://github.com/lgatto/rpx
• Owner: lgatto
• Created: 2013-11-30T01:14:48.000Z (about 11 years ago)
• Default Branch: master
• Last Pushed: 2023-09-26T14:45:10.000Z (about 1 year ago)
• Last Synced: 2024-10-13T17:51:45.875Z (2 months ago)
• Topics: bioconductor, data, mass-spectrometry, proteomexchange, proteomics
• Language: R
• Homepage: http://lgatto.github.io/rpx/
• Size: 1.4 MB
• Stars: 5
• Watchers: 3
• Forks: 2
• Open Issues: 10
• Metadata Files:
  • Readme: README.md

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README

        
## R Interface to the ProteomeXchange Repository

Thre `rpx` package is a simple programmatic interface to proteomics

data available in the ProteomeXchange repository. It uses a

ProteomeXchange identifier such as `PXD000001` to find and download

files associated with that project. The official Bioconductor is

[here](http://bioconductor.org/packages/release/bioc/html/rpx.html). The

GitHub page allows to browse the documentation and the vignette.

### Installation

To install the version matching your local R installation from the

Bioconductor repository:

```

if (!requireNamespace("BiocManager", quietly=TRUE))

    install.packages("BiocManager")

BiocManager::install("rpx")

```

And to install the very latest version from GitHub:

```

BiocManager::install("lgatto/rpx")

```

For a similar python-based software, see

[`ppx`](https://github.com/wfondrie/ppx/) by Will Fondrie.