https://github.com/lgatto/tidies
A Grammar of Data Manipulation for Omics Data
https://github.com/lgatto/tidies
Last synced: 23 days ago
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A Grammar of Data Manipulation for Omics Data
- Host: GitHub
- URL: https://github.com/lgatto/tidies
- Owner: lgatto
- Created: 2018-02-28T15:50:01.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2020-08-31T16:18:20.000Z (over 4 years ago)
- Last Synced: 2025-03-24T04:23:35.840Z (about 1 month ago)
- Language: R
- Homepage: https://lgatto.github.io/tidies/
- Size: 244 KB
- Stars: 21
- Watchers: 3
- Forks: 2
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
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README
# A Grammar of Data Manipulation for Omics Data
The `tidies` package implements tidy principles as defined in
the [tidyverse](https://www.tidyverse.org/) packages to omics-type
data classes, with (currently at least), an emphasis on quantitative
proteomics data.
Details and examples are provides in the
[vignette](https://lgatto.github.io/tidies/articles/tidies.html). See
also my [slides](http://bit.ly/tidies-eurobioc18) for the EuroBioc2018
conference.
## Installation
First, install the [Bioconductor](https://bioconductor.org/)
dependencies using the `BiocManager` package, that can be installed
from CRAN with `install.packages`.
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSnbase")
```
In case they aren't installed yet, please install `dplyr`, `tibble`
and `tidyr`:
```r
install.packages(c("dplyr", "tidyr", "tibble"))
```
Or just go agread and install the full tidyverse:
```r
install.packages("tidyverse")
```
You can now install the `tidies` package from github with:
```r
BiocManager::install("lgatto/tidies")
```
## Questions
Please ask question, report bugs and suggest improvements by opening a
GitHub [issue](https://github.com/lgatto/tidies/issues).
## Contributing
Contributions to the package are more than welcome. If you want to
contribute to this package, you should follow the same conventions as
the rest of the functions. Please do get in touch (preferable opening
a [github issue](https://github.com/lgatto/tidies/issues/)) to discuss
any suggestions.
Please note that this project is released with a [Contributor Code of
Conduct](https://github.com/lgatto/tidies/blob/master/CONDUCT.md). By
participating in this project you agree to abide by its terms.