https://github.com/likelet/plotappfortbtools
A shiny app for TBtools data plot
https://github.com/likelet/plotappfortbtools
shiny
Last synced: 27 days ago
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A shiny app for TBtools data plot
- Host: GitHub
- URL: https://github.com/likelet/plotappfortbtools
- Owner: likelet
- License: mit
- Created: 2016-08-11T09:01:32.000Z (almost 9 years ago)
- Default Branch: master
- Last Pushed: 2016-08-15T11:47:19.000Z (almost 9 years ago)
- Last Synced: 2025-04-19T12:59:20.707Z (about 1 month ago)
- Topics: shiny
- Language: R
- Homepage:
- Size: 779 KB
- Stars: 29
- Watchers: 5
- Forks: 2
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# PlotAppForTBtools V1.0.1
[TBtools](https://github.com/CJ-Chen/TBtools/releases) is a Toolset written by CJ-Chen for wet-lab biologists.It aims at facilitating some common and elaborate but simple molecular analysis tasks such as sequences extract, gene set functional enrichment It is easy to use and can run in all Operating system including Mac, Linux, Windows, which has Java run time environment higher than 1.6 . However, TBtools may mainly focus on data analysis procedure which make it difficult to plot fancy figures as well as being publishable. To cover the shortage, we implement an interactive plot websever using shiny programing env, and named TBploter
[Click here to redirect to TRploter website.](http://202.116.161.95:3839/sample-apps/PlotAppForTBtools/inst/TBploter/)
**Screen shoot of TBploter**
### Function gallary
**GOenriment ploter**
**KEGGenrichment ploter**
### Install dependencies
To check the dependencies installed correctly, this command can help users to check the status of each installation
```R
library("Packages for check")
```
Code for install dependencies R packages
```R
cDep <- c("ggplot2","shiny","shinyBS","shinydashboard","ggthemes","DT")
###INSTALLED PACKAGES
#get installed list
inst <- packageStatus()$inst
#check and install DEPENDENCIES from CRAN
for(i in 1:length(cDep)){
tag = which(inst$Package == cDep[i])
if(length(tag)){
remove.packages(cDep[i])
}
install.packages(cDep[i])
}
```
### Install TBploter
To install the latest development build directly from GitHub, run this:
```R
if (!require("devtools"))
install.packages("devtools")
devtools::install_github("likelet/PlotAppForTBtools")
```
### Update Information
####2016-8-15
add tiff plot function
### Designers:
Qi Zhao, [email protected]
### Developers:
Qi Zhao, [email protected]
Chenjie Chen,[email protected]
### Maintainer:
Qi Zhao
Please feel free contact us.
### Copyright
MIT license
### Citation
during preparation