https://github.com/likelet/rscriptcollection

Rscripts collection for ploting in daily research life
https://github.com/likelet/rscriptcollection

Last synced: 27 days ago
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Rscripts collection for ploting in daily research life

• Host: GitHub
• URL: https://github.com/likelet/rscriptcollection
• Owner: likelet
• Created: 2017-06-13T13:14:57.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2021-01-15T03:04:23.000Z (over 4 years ago)
• Last Synced: 2025-04-22T00:18:49.199Z (30 days ago)
• Language: R
• Homepage:
• Size: 6.68 MB
• Stars: 10
• Watchers: 5
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# RscriptCollection

This repo collected the custmized R script and the relavent plot.

Currently, only a few scripts were presented on git and i will be happy to write the datail usage of each script to make it repproductive for others.

## Project structure

| Directory | Content |

| --------- | ------- |

| [images](images) | Hold images produced by scripts |

| [scriptsWithData](scriptsWithData) | Maintain scripts (and data if exists) |

 

## Gallery

### Cleavage plot

![Cleavage plot](images/cleavage_plot.png)

### Tumor VS Met plot

![Tumor VS Met plot](images/met_VS_tum.png)

### Gene cumsum number plot

![Gene cumsum number plot](images/gene_cumsum_num.png)

### Gene expression Box plot in TCGA pancancer 

![Gene expression boxplot in TCGA](images/geneExpression_tcga.png)

### Indel ditribution plot based on Crispr cas9 PCR result 

![Indel distribution plot](images/Indel_distribution.png)

### Forest plot 

![Forest plot](images/forestplot.png)

### BarRatio Plot

![BarRatioplot](images/barRatioPlot.png)

### Heatmap for cfDNA

![heatmapForcfDNA](images/heatmapForcfDNA.png)

## How to contribute

Fork this repo, then add/modify contents according to the [structure](#project-structure).

For scripts with data, you should create a **new folder** then place them in. For single script, just leave it alone.