https://github.com/mfcovington/rnaseq_workshop
https://github.com/mfcovington/rnaseq_workshop
Last synced: over 1 year ago
JSON representation
- Host: GitHub
- URL: https://github.com/mfcovington/rnaseq_workshop
- Owner: mfcovington
- Created: 2012-07-18T15:06:35.000Z (about 14 years ago)
- Default Branch: master
- Last Pushed: 2012-07-24T23:05:04.000Z (almost 14 years ago)
- Last Synced: 2025-02-14T15:14:55.673Z (over 1 year ago)
- Language: R
- Size: 4.56 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
RNASeq_Workshop
===============
##R
To Install edgeR package:
source("http://bioconductor.org/biocLite.R")
biocLite("edgeR")
##Galaxy Histories:
[uploading files](https://main.g2.bx.psu.edu/u/mfcovington/h/uploading-files)
[Mike's Grape Files](https://main.g2.bx.psu.edu/u/mfcovington/h/mikes-grape-files)
[grape barcodes (final)](https://main.g2.bx.psu.edu/u/mfcovington/h/grapebarcodesfinal)
[Grape: 10 million, barcode split (final)](https://main.g2.bx.psu.edu/u/amf1/h/7191210milsplit)
[Grape - Full data set](https://main.g2.bx.psu.edu/u/mfcovington/h/grape-mfc)
##Useful links:
[Public Galaxy Server](https://main.g2.bx.psu.edu/)
[FASTQ Quality Scores](http://en.wikipedia.org/wiki/FASTQ_format#Encoding)
[Data File Formats](http://genome.ucsc.edu/FAQ/FAQformat.html)
##Arabidopsis homologs
AT1G12610
AT1G16820
AT1G35140
AT1G63030
AT2G07050
AT2G36640
AT2G44610
AT2G47180
AT3G03341
AT3G11760
AT3G23730
AT3G50980
AT3G57770
AT4G11070
AT4G17500
AT4G25810
AT4G35160
AT5G33406
AT5G42380
AT5G44210
AT5G51990
AT5G61890
AT5G64260
ATCG00020