https://github.com/microbiome/miatime

Microbiome time series analysis
https://github.com/microbiome/miatime

Last synced: about 1 year ago
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Microbiome time series analysis

• Host: GitHub
• URL: https://github.com/microbiome/miatime
• Owner: microbiome
• License: artistic-2.0
• Created: 2021-09-08T09:31:01.000Z (almost 5 years ago)
• Default Branch: devel
• Last Pushed: 2025-05-06T08:12:19.000Z (about 1 year ago)
• Last Synced: 2025-05-06T08:48:03.088Z (about 1 year ago)
• Language: R
• Homepage: https://microbiome.github.io/miaTime/
• Size: 39.8 MB
• Stars: 6
• Watchers: 5
• Forks: 6
• Open Issues: 16
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS
  • License: LICENSE

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README

          
# Microbiome time series manipulation with miaTime 

[![R-CMD-check-bioc-devel](https://github.com/microbiome/miaTime/workflows/R-CMD-check-bioc-devel/badge.svg)](https://github.com/microbiome/miaTime/actions)

[![Codecov test

coverage](https://codecov.io/gh/microbiome/miaTime/branch/master/graph/badge.svg)](https://codecov.io/gh/microbiome/miaTime?branch=master)

# miaTime

This R package can be used to analyse time series data for microbial

communities. The package is part of [miaverse](https://microbiome.github.io/), 

and is based on the `TreeSummarizedExperiment` data container.

See the [package homepage](https://microbiome.github.io/miaTime) for

example workflows.

## Installation

 

The package can be directly installed from R command line.

```{r, eval=FALSE, message=FALSE}

devtools::install_github("microbiome/miaTime")

library(miaTime)

```

### Contributions and acknowledgments

You can find us online from [Gitter](https://gitter.im/microbiome/miaverse).

Contributions are very welcome through issues and pull requests at the

[development site](https://github.com/microbiome/miaTime). We follow a git

flow kind of approach. Development version should be done against the

`main` branch and then merged to `release` for release.

(https://guides.github.com/introduction/flow/)

**Kindly cite this work**. For citation details, see R command

```{r}

citation("miaTime")  

```

# Code of conduct

The project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.