https://github.com/monarch-initiative/loinc2hpo

Java library to map LOINC-encoded test results to Human Phenotype Ontology
https://github.com/monarch-initiative/loinc2hpo

ehr fhir healthcare hpo loinc monarchinitiative

Last synced: 3 months ago
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Java library to map LOINC-encoded test results to Human Phenotype Ontology

• Host: GitHub
• URL: https://github.com/monarch-initiative/loinc2hpo
• Owner: monarch-initiative
• License: other
• Created: 2017-12-07T09:14:11.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2024-01-16T20:48:59.000Z (almost 2 years ago)
• Last Synced: 2025-04-05T15:11:14.455Z (7 months ago)
• Topics: ehr, fhir, healthcare, hpo, loinc, monarchinitiative
• Language: Java
• Homepage: http://loinc2hpo.readthedocs.io/en/latest/
• Size: 11.3 MB
• Stars: 31
• Watchers: 6
• Forks: 8
• Open Issues: 4
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE

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# loinc2hpo

A Java library to map tests results from [LOINC](https://loinc.org/) codes to  

[Human Phenotype Ontology.](https://hpo.jax.org/app/) terms.

For details, please see [Zhang et al. (2012)](https://pubmed.ncbi.nlm.nih.gov/31119199/) Semantic integration of clinical laboratory tests from electronic 

health records for deep phenotyping and biomarker discovery. *NPJ Digit Med*. 2019;2:32.

## LOINC2HPO annotation

The LOINC to HPO mapping file is available at the

[loinc2hpoAnnotation](https://github.com/TheJacksonLaboratory/loinc2hpoAnnotation) repository.

## Using loinc2hpo

loinc2hpo is intended to be used as a software library. Selected functions are demonstrated in the CLI app.

## documentation

Please refer to http://loinc2hpo.readthedocs.io/en/latest/.

## spring framework app

We are developing a separate app that will specialize in one functionality of this app - converting FHIR observations into HPO terms. The new app will be coded with the Spring framework and we strive to achieve enterprise-level quality. Please refer to the app with the following link: https://github.com/OCTRI/fhir2hpo

## funding

We gratefully acknowledge funding by NCATS (CD2H project, A NATIONAL CENTER FOR DIGITAL HEALTH INFORMATICS INNOVATION), 1U24TR002306