https://github.com/mooerslab/aca2022
Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
https://github.com/mooerslab/aca2022
aca cloud-computing colab-notebook emacs ghosttext literate-programming molecular-graphics pdb-database protein-structure pymol python sublime-text vim vsc
Last synced: 2 months ago
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Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
- Host: GitHub
- URL: https://github.com/mooerslab/aca2022
- Owner: MooersLab
- License: mit
- Created: 2022-08-01T12:49:54.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2024-05-25T01:01:50.000Z (about 1 year ago)
- Last Synced: 2025-02-07T03:42:11.885Z (4 months ago)
- Topics: aca, cloud-computing, colab-notebook, emacs, ghosttext, literate-programming, molecular-graphics, pdb-database, protein-structure, pymol, python, sublime-text, vim, vsc
- Homepage:
- Size: 3.93 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
[](https://opensource.org/licenses/MIT)
# Easing script writing in Google Colab with structural biology snippets
Slides from talk on 1 August 2022 at the 72nd Annual Meeting of the American Crystallographic Association: the Structural Sciences Society.
The talk was using using snippet libraries in Colab notebooks.
The end of the talk included using Neovim and other editors to code cells via GhostText; this might be the most widely useful takeaway from this talk.
The abstract has been published. A peer-reviewed paper is in preparation.
```bibtex
{
author = {Mooers, Blaine},
journal = {Foundations of Crystallography},
title = {Easing script writing on Google Colab with structural biology snippets},
year = {2022},
volume = (A78},
pages = {a175},
}
```
## Related repositories
- [easypymol](https://github.com/MooersLab/EasyPyMOL/edit/master/README.md)
- [pymolshortcuts](https://github.com/MooersLab/pymolshortcuts)
- [orgpymolpysnips](https://github.com/MooersLab/orgpymolpysnips)
- [rstudiopymolpysnips](https://github.com/MooersLab/rstudiopymolpysnips)
- [taggedpymolpysnips](https://github.com/MooersLab/taggedpymolpysnips)
- [jupyterlabpymolpysnips](https://github.com/MooersLab/jupyterlabpymolpysnips)
- [colabOpenSourcePyMOLpySnips](https://github.com/MooersLab/colabOpenSourcePyMOLpySnips)
- [colabPyMOLpySnips](https://github.com/MooersLab/colabPyMOLpySnips)
- [PyMOLwallhangings](https://github.com/MooersLab/PyMOLwallhangings)
## Update history
|Version | Changes | Date |
|:-----------:|:------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------:|
| Version 0.2 | Added badges, funding, and update table. | 2024 May 24 |
## Sources of funding
- NIH: R01 CA242845
- NIH: R01 AI088011
- NIH: P30 CA225520 (PI: R. Mannel)
- NIH: P20 GM103640 and P30 GM145423 (PI: A. West)