https://github.com/mooerslab/aca2022

Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
https://github.com/mooerslab/aca2022

aca cloud-computing colab-notebook emacs ghosttext literate-programming molecular-graphics pdb-database protein-structure pymol python sublime-text vim vsc

Last synced: 8 days ago
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Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association

• Host: GitHub
• URL: https://github.com/mooerslab/aca2022
• Owner: MooersLab
• Created: 2022-08-01T12:49:54.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2022-10-11T12:39:23.000Z (about 2 years ago)
• Last Synced: 2023-05-14T16:28:05.173Z (over 1 year ago)
• Topics: aca, cloud-computing, colab-notebook, emacs, ghosttext, literate-programming, molecular-graphics, pdb-database, protein-structure, pymol, python, sublime-text, vim, vsc
• Homepage:
• Size: 3.92 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
![Version](https://img.shields.io/static/v1?label=ACA2022&message=0.2&color=brightcolor)

[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/licenses/MIT)

# Easing script writing in Google Colab with structural biology snippets

Slides from talk on 1 August 2022 at the 72nd Annual Meeting of the American Crystallographic Association: the Structural Sciences Society. 

The talk was using using snippet libraries in Colab notebooks. 

The end of the talk included using Neovim and other editors to code cells via GhostText; this might be the most widely useful takeaway from this talk.

The abstract has been published. A peer-reviewed paper is in preparation.

```bibtex

{

  author  = {Mooers, Blaine},

  journal = {Foundations of Crystallography},

  title   = {Easing script writing on Google Colab with structural biology snippets},

  year    = {2022},

  volume = (A78},

  pages = {a175},

}

```

## Related repositories

- [easypymol](https://github.com/MooersLab/EasyPyMOL/edit/master/README.md)

- [pymolshortcuts](https://github.com/MooersLab/pymolshortcuts)

- [orgpymolpysnips](https://github.com/MooersLab/orgpymolpysnips)

- [rstudiopymolpysnips](https://github.com/MooersLab/rstudiopymolpysnips)

- [taggedpymolpysnips](https://github.com/MooersLab/taggedpymolpysnips)

- [jupyterlabpymolpysnips](https://github.com/MooersLab/jupyterlabpymolpysnips)

- [colabOpenSourcePyMOLpySnips](https://github.com/MooersLab/colabOpenSourcePyMOLpySnips)

- [colabPyMOLpySnips](https://github.com/MooersLab/colabPyMOLpySnips)

- [PyMOLwallhangings](https://github.com/MooersLab/PyMOLwallhangings)

## Update history

|Version      | Changes                                                                                                                                                                         | Date                 |

|:-----------:|:------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------:|

| Version 0.2 |   Added badges, funding, and update table.                                                                                                                  | 2024 May 24         |

## Sources of funding

- NIH: R01 CA242845

- NIH: R01 AI088011

- NIH: P30 CA225520 (PI: R. Mannel)

- NIH: P20 GM103640 and P30 GM145423 (PI: A. West)