https://github.com/mrc-ide/shiny90

Shiny tool for the first 90 HIV model (https://github.com/mrc-ide/first90)
https://github.com/mrc-ide/shiny90

Last synced: 7 days ago
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Shiny tool for the first 90 HIV model (https://github.com/mrc-ide/first90)

• Host: GitHub
• URL: https://github.com/mrc-ide/shiny90
• Owner: mrc-ide
• License: mit
• Created: 2018-08-29T13:32:42.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2023-05-09T08:50:43.000Z (over 1 year ago)
• Last Synced: 2024-11-06T02:31:37.431Z (about 2 months ago)
• Language: R
• Homepage: https://shiny90.unaids.org/
• Size: 534 KB
• Stars: 2
• Watchers: 3
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# shiny90

Shiny tool for the first 90 HIV model (https://github.com/mrc-ide/first90)

[![Travis-CI Build Status](https://travis-ci.com/mrc-ide/shiny90.svg?branch=master)](https://travis-ci.com/mrc-ide/shiny90)

## Prerequisites

1. Make sure you have R installed and added to your path

2. If you are on Windows you will also need Rtools to install dependencies from Github:

http://stat.sfu.ca/statgen/resources/r-tools-for-building-packages-on-windows.html

## Install dependencies

Run

```

./scripts/bootstrap.R

```

to install R dependencies.

## Run app

To run the app: `./run.R`

To run the app with an inaccurate model for quick testing:

```

SHINY90_TEST_MODE=TRUE ./run.R

```

## Tests

For unit tests:

```

./scripts/bootstrap-dev.R

./scripts/unittest

```

For Selenium tests:

```

sudo ./scripts/install_geckodriver.sh

./scripts/test

```

They should also run at https://travis-ci.com/mrc-ide/shiny90

# Sample files

Available on SharePoint [here](https://imperiallondon-my.sharepoint.com/:f:/r/personal/epidem_ic_ac_uk/Documents/UNAIDS%20Ref%20Group%20Shared%20Drive/Ref%20Group%20Meetings/Meetings%202018/first%2090%20workshop%20-%20Wisbech%20August%202018?csf=1&e=MFospr)

Or if you access to the private repo, you can get at sample files via the submodule:

```

git submodule init

git submodule update

ls sample_files

```

# Build a USB stick

**You must be on the Imperial Dide network for this to work**

```

./scripts/build_usb.sh

```