https://github.com/mrc-ide/specio

:rainbow: Spectrum IO for EPP model for HIV epidemic estimates
https://github.com/mrc-ide/specio

epp spectrum

Last synced: about 2 months ago
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:rainbow: Spectrum IO for EPP model for HIV epidemic estimates

• Host: GitHub
• URL: https://github.com/mrc-ide/specio
• Owner: mrc-ide
• Created: 2019-01-04T14:41:29.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2021-04-12T16:43:50.000Z (over 3 years ago)
• Last Synced: 2023-09-08T09:08:31.180Z (over 1 year ago)
• Topics: epp, spectrum
• Language: R
• Homepage: https://mrc-ide.github.io/specio/
• Size: 17.6 MB
• Stars: 1
• Watchers: 5
• Forks: 0
• Open Issues: 3
• Metadata Files:
  • Readme: README.md

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README

        
# specio 

[![Project Status: WIP - Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](http://www.repostatus.org/badges/latest/wip.svg)](http://www.repostatus.org/#wip)

[![Travis-CI Build Status](https://travis-ci.org/mrc-ide/specio.svg?branch=master)](https://travis-ci.org/mrc-ide/specio)

[![codecov.io](https://codecov.io/github/mrc-ide/specio/coverage.svg?branch=master)](https://codecov.io/github/mrc-ide/specio?branch=master)

`specio` handles reading and parsing data from Spectrum PJNZ file into an R consumable format for use in the [Estimation and Projection Package (EPP)](https://github.com/mrc-ide/eppasm) for estimating and projecting HIV prevalence.

## Usage

As well as the functions required for EPP `specio` also provides 2 more general functions for extracting population data and PLHIV data from the PJNZ file. These are `extract_population` and `extract_hiv_population`. See [website reference](https://mrc-ide.github.io/specio/reference/index.html) for usage and examples.

## Installation

To install internally released version via drat:

```r

# install.packages("drat") # (if needed)

drat:::add("mrc-ide")

install.packages("specio")

```