https://github.com/ms609/congrevelamsdell2016

Data generated from Congreve and Lamsdell (2016). See readme below for documentation.
https://github.com/ms609/congrevelamsdell2016

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Data generated from Congreve and Lamsdell (2016). See readme below for documentation.

• Host: GitHub
• URL: https://github.com/ms609/congrevelamsdell2016
• Owner: ms609
• Created: 2018-11-19T10:05:15.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2024-02-29T11:27:33.000Z (11 months ago)
• Last Synced: 2024-02-29T13:16:02.864Z (11 months ago)
• Language: R
• Homepage: https://ms609.github.io/CongreveLamsdell2016/
• Size: 477 MB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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# CongreveLamsdell2016

This R package provides data and analyses that accompany the paper

- Smith, M. R. (2019), Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets, _Biological Letters_, 15:20180632, 

doi:[10.1098/rsbl.2018.0632](https://doi.org/10.1098/rsbl.2018.0632).

It incorporates data from:

- Congreve, C. R., and J. C. Lamsdell. 2016. Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. _Palaeontology_, 59:447–462. doi:[10.1111/pala.12236](https://dx.doi.org/10.1111/pala.12236).

- Congreve, C. R., and J. C. Lamsdell. 2016. Data from: Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. _Dryad Digital Repository_, doi:[10.5061/dryad.7dq0j](https://dx.doi.org/10.5061/dryad.7dq0j).

Some of these data are used in the [`Quartet`](https://ms609.github.io/Quartet/) package.

Equivalent data and analyses from data simulated by O'Reilly _et al._ (2016) 

are available at [ms609.github.io/OReillyEtAl2016](https://ms609.github.io/OReillyEtAl2016/).

## Installation

## 

Install and load the library from CRAN as follows:

```

install.packages('CongreveLamsdell2016')

library('CongreveLamsdell2016')

```

## Documentation

The package includes documentation and visualizations of its results:

* R Package manual: [PDF](https://ms609.github.io/CongreveLamsdell2016/CongreveLamsdell2016_1.0.2.pdf)

* How to conduct the analyses:

[HTML](https://ms609.github.io/CongreveLamsdell2016/Conduct-analyses.html) | 

[PDF](https://ms609.github.io/CongreveLamsdell2016/Conduct-analyses.pdf)

* Node support comparisons:

[HTML](https://ms609.github.io/CongreveLamsdell2016/Compare-node-supports.html) | 

[PDF](https://ms609.github.io/CongreveLamsdell2016/Compare-node-supports.pdf)

* Comparisons of phylogenetic methods:

[HTML](https://ms609.github.io/CongreveLamsdell2016/Compare-methods.html) | 

[PDF](https://ms609.github.io/CongreveLamsdell2016/Compare-methods.pdf)