https://github.com/ms609/congrevelamsdell2016
Data generated from Congreve and Lamsdell (2016). See readme below for documentation.
https://github.com/ms609/congrevelamsdell2016
Last synced: 2 months ago
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Data generated from Congreve and Lamsdell (2016). See readme below for documentation.
- Host: GitHub
- URL: https://github.com/ms609/congrevelamsdell2016
- Owner: ms609
- Created: 2018-11-19T10:05:15.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2024-02-29T11:27:33.000Z (over 2 years ago)
- Last Synced: 2025-01-13T08:47:09.636Z (over 1 year ago)
- Language: R
- Homepage: https://ms609.github.io/CongreveLamsdell2016/
- Size: 477 MB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
Awesome Lists containing this project
README
[](https://www.repostatus.org/#inactive)
[](https://cran.r-project.org/package=CongreveLamsdell2016)
[](https://cran.r-project.org/package=CongreveLamsdell2016)
[](https://doi.org/10.5281/zenodo.2536874)
# CongreveLamsdell2016
This R package provides data and analyses that accompany the paper
- Smith, M. R. (2019), Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets, _Biological Letters_, 15:20180632,
doi:[10.1098/rsbl.2018.0632](https://doi.org/10.1098/rsbl.2018.0632).
It incorporates data from:
- Congreve, C. R., and J. C. Lamsdell. 2016. Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. _Palaeontology_, 59:447–462. doi:[10.1111/pala.12236](https://dx.doi.org/10.1111/pala.12236).
- Congreve, C. R., and J. C. Lamsdell. 2016. Data from: Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. _Dryad Digital Repository_, doi:[10.5061/dryad.7dq0j](https://dx.doi.org/10.5061/dryad.7dq0j).
Some of these data are used in the [`Quartet`](https://ms609.github.io/Quartet/) package.
Equivalent data and analyses from data simulated by O'Reilly _et al._ (2016)
are available at [ms609.github.io/OReillyEtAl2016](https://ms609.github.io/OReillyEtAl2016/).
## Installation
##
Install and load the library from CRAN as follows:
```
install.packages('CongreveLamsdell2016')
library('CongreveLamsdell2016')
```
## Documentation
The package includes documentation and visualizations of its results:
* R Package manual: [PDF](https://ms609.github.io/CongreveLamsdell2016/CongreveLamsdell2016_1.0.2.pdf)
* How to conduct the analyses:
[HTML](https://ms609.github.io/CongreveLamsdell2016/Conduct-analyses.html) |
[PDF](https://ms609.github.io/CongreveLamsdell2016/Conduct-analyses.pdf)
* Node support comparisons:
[HTML](https://ms609.github.io/CongreveLamsdell2016/Compare-node-supports.html) |
[PDF](https://ms609.github.io/CongreveLamsdell2016/Compare-node-supports.pdf)
* Comparisons of phylogenetic methods:
[HTML](https://ms609.github.io/CongreveLamsdell2016/Compare-methods.html) |
[PDF](https://ms609.github.io/CongreveLamsdell2016/Compare-methods.pdf)