https://github.com/ms609/treedistdata

Data and vignettes to accompany TreeDist packages
https://github.com/ms609/treedistdata

Last synced: 19 days ago
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Data and vignettes to accompany TreeDist packages

• Host: GitHub
• URL: https://github.com/ms609/treedistdata
• Owner: ms609
• Created: 2019-07-11T11:23:58.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2024-06-21T08:41:01.000Z (7 months ago)
• Last Synced: 2024-06-22T02:03:43.308Z (7 months ago)
• Language: R
• Homepage: https://ms609.github.io/TreeDistData/
• Size: 341 MB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • Code of conduct: CODE_OF_CONDUCT.md

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README

        
# TreeDistData

[![Project Status: Inactive – The project has reached a stable, usable state but is no longer being actively developed; support/maintenance will be provided as time allows.](http://www.repostatus.org/badges/latest/inactive.svg)](http://www.repostatus.org/#inactive)

[![Build status](https://github.com/ms609/TreeDistData/actions/workflows/pkgdown.yml/badge.svg)](https://github.com/ms609/TreeDistData/actions/)

[![CRAN Status Badge](http://www.r-pkg.org/badges/version/TreeDistData)](https://cran.r-project.org/package=TreeDistData)

[![DOI](https://zenodo.org/badge/196380775.svg)](https://zenodo.org/badge/latestdoi/196380775)

'[TreeDistData](https://ms609.github.io/TreeDistData/)' is an R package 

intended to accompany the '[TreeDist](https://ms609.github.io/TreeDist/)' 

package. It contains the functions and scripts used to compare the performance 

of tree distance measures in Smith (2020).

"[Articles](https://ms609.github.io/TreeDistData/articles/)" lists vignettes

detailing the output of analyses corresponding

to the stated sections of Smith (2020).  Each of these pages includes a

link to the R source code, which can be used to reproduce the analytical

results.

"[Reference](https://ms609.github.io/TreeDistData/reference/)" lists

convenience functions, which facilitate calls to 'TreeDist', and data objects 

that store the results of lengthy analyses.  The code used to generate

these data objects is available in the

[`data-raw`](https://github.com/ms609/TreeDistData/tree/master/data-raw)

directory.

## References

Smith, M.R. (2020). [Information theoretic Generalized Robinson-Foulds metrics

  for comparing phylogenetic trees](https://dx.doi.org/10.1093/bioinformatics/btaa614).

  _Bioinformatics_ 36: 5007–5013.