https://github.com/mskcc/smile-server

https://github.com/mskcc/smile-server

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• Host: GitHub
• URL: https://github.com/mskcc/smile-server
• Owner: mskcc
• Created: 2020-11-12T17:58:32.000Z (about 4 years ago)
• Default Branch: master
• Last Pushed: 2024-11-07T19:09:22.000Z (about 1 month ago)
• Last Synced: 2024-11-07T19:35:39.079Z (about 1 month ago)
• Language: Java
• Size: 657 KB
• Stars: 2
• Watchers: 4
• Forks: 4
• Open Issues: 83
• Metadata Files:
  • Readme: README.md

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README

        
# CMO SMILE Server 🔍

SMILE is a distributed microservices system. It receives messages from LIMS when a request is marked delivered. This message is processed and persisted to NEO4J. Any new message is then published to downstream subscribers.

## Run

### Custom properties

Make an `application.properties` based on [application.properties.EXAMPLE](src/main/resources/application.properties.EXAMPLE).

All properties are required with the exception of some NATS connection-specific properties. The following are only required if `nats.tls_channel` is set to `true`:

- `nats.keystore_path` : path to client keystore

- `nats.truststore_path` : path to client truststore

- `nats.key_password` : keystore password

- `nats.store_password` : truststore password

### Locally

**Requirements:**

- maven 3.6.1

- java 8

Add `application.properties` to the local application resources: `src/main/resources`

Build with

```

mvn clean install

```

Run with

```

java -jar server/target/smile_server.jar

```

### With Docker

**Requirements**

- docker

Build image with Docker

```

docker build -t /: .

```

Push image to DockerHub

```

docker push /:

```

If the Docker image is built with the properties baked in then simply run with:

```

docker run --name smile-server /: \

	-jar /smile-server/smile_server.jar

```

Otherwise use a bind mount to make the local files available to the Docker image and add  `--spring.config.location` to the java arg

```

docker run --mount type=bind,source=,target=/smile-server/src/main/resources \

	--name smile-server /: \

	-jar /smile-server/smile_server.jar \

	--spring.config.location=/cmo-metadb/src/main/resources/application.properties

```