https://github.com/multiomics-analytics-group/airbiome_microb_asso_net_report

This repository contains a summary of the main results for the microbial association networks from the AirBiome project. The reports were generated using VueGen, a tool to automate the creation of scientific reports.
https://github.com/multiomics-analytics-group/airbiome_microb_asso_net_report

Last synced: 4 months ago
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This repository contains a summary of the main results for the microbial association networks from the AirBiome project. The reports were generated using VueGen, a tool to automate the creation of scientific reports.

• Host: GitHub
• URL: https://github.com/multiomics-analytics-group/airbiome_microb_asso_net_report
• Owner: Multiomics-Analytics-Group
• Created: 2025-08-10T17:15:44.000Z (10 months ago)
• Default Branch: main
• Last Pushed: 2025-08-10T18:19:01.000Z (10 months ago)
• Last Synced: 2025-08-10T20:21:52.888Z (10 months ago)
• Language: HTML
• Homepage: https://multiomics-analytics-group.github.io/airbiome_microb_asso_net_report/
• Size: 2.25 MB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# AirBiome Project: Microbial Association Network Analysis Summary

This repository contains a summary of the main results for the microbial association networks from the AirBiome project. The reports 

were generated using [VueGen](https://github.com/Multiomics-Analytics-Group/vuegen), a tool to automate the creation of scientific reports.

## Online Reports

The reports generated for this project are available online:

[![HTML5](https://img.shields.io/badge/html5-%23E34F26.svg?style=for-the-badge&logo=html5&logoColor=white)][html-report]

[![Streamlit](https://img.shields.io/badge/Streamlit-%23FE4B4B.svg?style=for-the-badge&logo=streamlit&logoColor=white)][streamlit-report]    

## Run the Reports locally

### Streamlit Report

To run the Streamlit report, ensure you have the required dependencies installed, then navigate to the `streamlit_report` directory and run the main script.

```bash

cd streamlit_report

pip install -r requirements.txt

streamlit run sections/report_manager.py

```

### Quarto Reports

The HTML and Reveal.js reports in the `quarto_report` directory can be viewed directly in a web browser.

## Scripts, Data and Raw Outputs

The scripts, data, and raw outputs used to generate these reports are available in this [repository](https://github.com/Multiomics-Analytics-Group/airbiome).

## Project Structure

The repository is organized as follows:

| Folder | Description |

|---|---|

| `AirBiome_microbial_association_networks_summary/` | Contains all the data and raw outputs from the analysis. |

| `streamlit_report/` | Contains the scripts for a Streamlit report. This interactive report allows for dynamic exploration of the output. |

| `quarto_report/` | Includes HTML and Reveal.js reports. |

| `airbiome_microbial_association_networks_summary_config.yaml` | Configuration file for the VueGen report generation, which can be extended with additional information. |

| `Network_visualizations_cytoscape/` | Holds Cytoscape session files for detailed network visualizations of adjacency and association networks. |

[html-report]: https://multiomics-analytics-group.github.io/airbiome_microb_asso_net_report/

[streamlit-report]: https://airbiome-microb-ass-net-summary.streamlit.app/