https://github.com/muschellij2/open_neuro

Open Neuroimaging Datasets
https://github.com/muschellij2/open_neuro

Last synced: about 1 month ago
JSON representation

Open Neuroimaging Datasets

• Host: GitHub
• URL: https://github.com/muschellij2/open_neuro
• Owner: muschellij2
• Created: 2015-11-12T17:01:44.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2015-11-12T21:08:16.000Z (about 9 years ago)
• Last Synced: 2024-10-16T08:22:13.981Z (3 months ago)
• Size: 0 Bytes
• Stars: 20
• Watchers: 3
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
# Open Neuroimaging Datasets

* Acronyms:

    * Imaging Modalities:

        * MRI (Magnetic Resonance Imaging)

            * if imaging modality is MRI with no prefix (such as f, for fMRI), this refers to structrual MRI (sMRI)

        * fMRI - functional MRI

        * dMRI - diffusion MRI

        * DTI - Diffusion Tensor Imaging, a type of diffusion MRI

        * PET - Positron Emission Tomography

        * CT - X-ray Computed Tomography

        * MEG - Magnetoencephalography

        * MRA - Magnetic Resonance Angiogram 

    * Imaging Sequences:

        * T1/T1w - [T1-weighted imaging](http://radiopaedia.org/articles/t1-weighted-image)

        * T2/T2w - [T2-weighted imaging](http://radiopaedia.org/articles/t2-weighted-image)

        * PD - proton density

        * FLAIR - Fluid-attenuated inversion recovery, a T2-weighted modality

    * Diseases

        * TBI - Traumatic Brain Injury

        * AD - Alzheimer's Disease (most likely) or Autism Disorder (usually in child data sets)

        * MCI - Mild Cognitive Impairment

        * ADHD - Attention Deficit Hyperactivity Disorder

        * 

## Overall Repositories

* [NITRC (Neuroimaging Informatics Tools and Resources Clearinghouse)](https://www.nitrc.org/)

    * [NITRC Data Resources](https://www.nitrc.org/search/?type_of_search=group&cat=325:Data)

    * Look at F1000

## MRI

* [IXI Datasets](https://biomedic.doc.ic.ac.uk/brain-development/index.php?n=Main.Datasets)

    * 600 MR images from normal, healthy subjects. * The MR image acquisition protocol for each subject includes:

    * T1, T2 and PD-weighted images

    * MRA images

    * Diffusion-weighted images (15 directions)

* [LONI Datasets](https://ida.loni.usc.edu/services/Menu/IdaData.jsp)

    * International Consortium for Brain Mapping (ICBM)

        * N = 851, Normal Controls

        * MRI, fMRI, MRA, DTI, PET

    * Alzheimer's Disease Neuroimaging Initiative (ADNI)

        * N > 2000, Controls, Alzheimer's Disease (AD), Mild Cognitive Impairment (MCI)

        * MRI, PET

    * Brain Aging in Vietnam War Veterans (ADNIDOD)

        * N = 195, Traumatic Brain Injury (TBI), Post-traumatic stress disorder (PTSD), Controls

        * MRI, fMRI, DTI, PET

    * Australian Imaging Biomarkers & Lifestyle Flagship Study of Ageing (AIBL)

        * N = 292, Controls, Alzheimer's Disease (AD), Mild Cognitive Impairment (MCI)

        * MRI, PET

    * Parkinson's Progression Markers Initiative (PPMI)

        * N = 595, Controls, Parkinson's

        * MRI, SPECT, DTI

* [Human Connectome Project](http://www.humanconnectome.org/)

    * MRI, fMRI, dMRI

* [ABIDE](http://fcon_1000.projects.nitrc.org/indi/abide/)

* [Beijing Normal University, State Key Laboratory of Cognitive Neuroscience and Learning Enhanced Sample](http://fcon_1000.projects.nitrc.org/indi/retro/BeijingEnhanced.html)

    * N = 180

    * 8-minute resting state fMRI scan (R-fMRI)

    * MPRAGE anatomical scan, defaced to protect patient confidentiality

    * 64-direction diffusion tensor imaging scan

    * Demographic information and Verbal, Performance, and Full IQ as measured using the Welscher Adult Intelligence Scale Revised

## Preprocessed MRI

* [Preprocessed Connectomes Project](http://preprocessed-connectomes-project.github.io/datasets.html)

    * ABIDE

    * ADHD-200

    * Beijing DTI

## PET

* [](http://adni.loni.usc.edu/data-samples/pet/)