https://github.com/neurogenomics/rarediseaseprioritisation
Prioritise cell-type-specific gene targets from the Rare Disease Celltyping project.
https://github.com/neurogenomics/rarediseaseprioritisation
aav celltypes clinical-research genomics rare-disease scrna-seq single-cell-genomics
Last synced: 3 months ago
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Prioritise cell-type-specific gene targets from the Rare Disease Celltyping project.
- Host: GitHub
- URL: https://github.com/neurogenomics/rarediseaseprioritisation
- Owner: neurogenomics
- Created: 2022-06-08T12:37:20.000Z (about 3 years ago)
- Default Branch: master
- Last Pushed: 2024-03-21T10:49:05.000Z (about 1 year ago)
- Last Synced: 2025-02-08T17:16:59.463Z (4 months ago)
- Topics: aav, celltypes, clinical-research, genomics, rare-disease, scrna-seq, single-cell-genomics
- Language: HTML
- Homepage:
- Size: 77.9 MB
- Stars: 2
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.Rmd
Awesome Lists containing this project
README
---
title: "README"
author: "
Authors:
Momoko Otani, Brian M. Schilder, Nathan G. Skene"
date: "README updated: `r format( Sys.Date(), '%b-%d-%Y')`
"
output:
github_document
---
# About
Prioritise cell-type-specific gene targets from
the [Rare Disease Celltyping](https://neurogenomics.github.io/rare_disease_celltyping_apps/home/)
project.
Thesis project by Momoko Otani, supervised by Nathan Skene and Brian Schilder.
# Rmarkdown reports
## [Prioritise targets](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/prioritise_targets)
### [Reduced network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/top_targets_network.html)
### [Extended network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/all_targets_network.html)
## [HPO annotations](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/HPO_annotations)
## [Neurodegeneration](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/neurodegeneration)
### [dementia/neurodegeneration vs. diabetes/obesity network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/dementia_diabetes_network.html)
## [Cardiovascular](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/cardiovascular.html)
### [Default network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/cardiovascular_network.html)
### [Hierarchical network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/cardiovascular_hierarchical_network.html)
## [Symptoms](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/symptoms)
## [Differential outcomes](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/differential_outcomes)
## [GPT annotations](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/gpt_annotations)
## [Orphanet prevalence data](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/orphanet_prevalence)
## [CSL Areas of Interest](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/CSL)