https://github.com/nextflow-io/nf-hack17
Nextflow hackathon 2017 projects
https://github.com/nextflow-io/nf-hack17
hackathon nextflow
Last synced: 9 days ago
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Nextflow hackathon 2017 projects
- Host: GitHub
- URL: https://github.com/nextflow-io/nf-hack17
- Owner: nextflow-io
- Archived: true
- Created: 2017-07-10T09:38:54.000Z (almost 8 years ago)
- Default Branch: master
- Last Pushed: 2017-09-28T15:05:09.000Z (over 7 years ago)
- Last Synced: 2025-03-07T07:12:03.287Z (2 months ago)
- Topics: hackathon, nextflow
- Language: Shell
- Size: 25.1 MB
- Stars: 10
- Watchers: 9
- Forks: 2
- Open Issues: 11
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Metadata Files:
- Readme: README.md
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README
# Nextflow hackathon 2017 projects
This repository lists the project ideas and the material used during the hackathon organised
in the context of the [Nextflow workshop](https://www.nextflow.io/blog/2017/nextflow-workshop.html)
that will take on 14-15 September 2017 in Barcelona.
### Location
[PRBB building](https://www.google.es/maps/place/CRG/@41.3853788,2.191863,17z/data=!3m1!4b1!4m5!3m4!1s0x12a4a305ffd98f7b:0xd9cd1df01bab41bc!8m2!3d41.3853788!4d2.1940517?hl=en), Charles Darwin room, ground floor (you will need an ID card to enter in the building).
### Schedule
The workshop schedule is available [here](schedule.md).
### Event chat
We will use the following Gitter [channel](https://gitter.im/nextflow-io/hack17) during the workshop activities. Feel free to register and use it for any question about logistic, problems, doubts during the hackathon, etc.
### Hackathon
Project ideas are listed in the [issues page](https://github.com/nextflow-io/hack17/issues).
Feel free to join one of the listed project or create a new one if you have a specific idea on which you would like to work.
We also encourage you to create a separate GitHub repository to keep track your project files and link it to the relative [project idea](https://github.com/nextflow-io/hack17/issues) in the above link. This will allow us to share and follow-up the hackathon achievement.
### Tutorial
The Nextflow tutorial is available at [this reporitory](https://github.com/nextflow-io/hack17-tutorial).
Tutorial participants are encouraged to implement the Variant Calling pipeline described in [this tutorial](https://nextflow-io.github.io/hack17-varcall/) in the second day.
### Slides
You can find below the link to the speaker slides:
* Frédéric Lemoine - [Large scale benchmarking of Phylogenetic bootstrap methods](slides/Frederic-Lemoine.pdf)
* Hugues Fontenelle - [Medical Genetics at Oslo University Hospital](slides/hugues-fontenelle.pdf)
* Jordi Rambla - [Standardizing life sciences datasets to improve reproducibility in the EOSC](slides/Jordi-Rambla.pdf)
* Luca Cozzuto - [From zero to Nextflow](https://www.slideshare.net/lucacozzuto/from-zero-to-nextflow-2017)
* Matthieu Foll - [Computational workflows for omics analyses at the IARC](https://www.slideshare.net/MatthieuFoll/computational-workflows-for-omics-analyses-at-the-iarc)
* Paolo Di Tommaso - [Lessons learned and new challenges](https://speakerdeck.com/pditommaso/nextflow-workshop-17-lessons-learned-and-new-challenges)
* Phil Ewels - [Standardising Swedish genomics analyses using Nextflow](https://www.slideshare.net/tallphil/standardising-swedish-genomics-analyses-using-nextflow/1)
* Scott Hazelhurst - [Building pipelines to support African bioinformatics](slides/Scott-Hazelhurst.pdf)
* Tim Dudgeon - [ Nextflow for chemistry - crossing the divide](slides/Tim-Dudgeon.pdf)