https://github.com/nimh-dsst/dataset-phenotypes
Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
https://github.com/nimh-dsst/dataset-phenotypes
abcd abcd-study abide abide-data bids data-dictionary dataset datasets hbn hcp nki phenotype phenotypic pnc tabular tabular-data ukb ukbb ukbiobank
Last synced: 5 months ago
JSON representation
Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
- Host: GitHub
- URL: https://github.com/nimh-dsst/dataset-phenotypes
- Owner: nimh-dsst
- License: cc0-1.0
- Created: 2022-11-18T17:04:39.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2023-08-01T13:57:22.000Z (almost 3 years ago)
- Last Synced: 2026-01-13T01:25:38.415Z (5 months ago)
- Topics: abcd, abcd-study, abide, abide-data, bids, data-dictionary, dataset, datasets, hbn, hcp, nki, phenotype, phenotypic, pnc, tabular, tabular-data, ukb, ukbb, ukbiobank
- Language: Python
- Homepage: https://bids-phenotype.readthedocs.io
- Size: 7.64 MB
- Stars: 9
- Watchers: 5
- Forks: 2
- Open Issues: 13
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Citation: CITATION.cff
Awesome Lists containing this project
README
[](https://zenodo.org/badge/latestdoi/567824366)
[](#contributors-)
# Big neuroimaging dataset BIDS tabular phenotype tools
Preparatory scripts to output BIDS phenotypic data dictionaries and transform phenotypic data to BIDS TSVs for common neuroimaging datasets.
These tools follow the guidelines of [BIDS Extension Proposal 36 (BEP036)](https://docs.google.com/document/d/1WTkfES8L0vItZVyyR68fc-9cO03jS-kCnMnw6602pbc/edit#heading=h.gjdgxs). The hope is for researchers to embrace this BIDS Phenotypic Data standard by seeing examples in their favorite datasets.
## Use GitHub Issues with this repository
The GitHub Issues page found here should be used to communicate all of the following:
1. Asking **questions** of any size or difficulty
1. Providing **feedback** on any file's inaccuracies or considering changes
1. Suggesting or requesting **features**
1. Making **new dataset requests** (describe how to download the phenotypic data dictionaries and phenotypic data and it will be added to the queue
1. Proposing **ideas** to improve the repository
1. Reporting **bugs** in scripts or any other repository files
1. **Corrections** to README.md files, dictionary entries, or whole assessments
1. Style **suggestions** or suggested common conventions for scripts, dictionaries, or README.md files
1. **Anything else** that isn't a code contribution or a pull request
## How to Pull Request
Pull Requests (PRs) are also always welcome here to initiate a review of some fix or addition or change to the repository. Please fork, make your changes, and then initiate a PR from your fork back to this repository's `main` branch.
## Contributors ✨
Contributors are always welcome to add GitHub Issues (see section above). Thanks especially go to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)):
Eric Earl
🐛 💻 🖋 🔣 🎨 🤔 🚧 📆 👀
Jessica Dafflon
🐛 💻 🖋 🤔 📆 👀
Josh Faskowitz
💻 🤔
RobertoFelipeSG
💻 🎨 🤔
Arshitha Basavaraj
🐛 🖋 🤔
Dustin Moraczewski
🔣
Adam Thomas
🖋 🤔 📆
Francisco Pereira
🤔 📆
This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind are welcome!