https://github.com/nipreps/nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"
https://github.com/nipreps/nireports

Last synced: about 9 hours ago
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The NiPreps' Reporting and Visualization system - report templates and "reportlets"

• Host: GitHub
• URL: https://github.com/nipreps/nireports
• Owner: nipreps
• License: apache-2.0
• Created: 2022-04-19T15:42:48.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-08-25T23:34:58.000Z (3 months ago)
• Last Synced: 2024-09-26T07:39:40.070Z (about 2 months ago)
• Language: Python
• Homepage: https://nireports.readthedocs.io
• Size: 93.6 MB
• Stars: 7
• Watchers: 4
• Forks: 19
• Open Issues: 19
• Metadata Files:
  • Readme: README.rst
  • Changelog: CHANGES.rst
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

Awesome Lists containing this project

• awesoMRI-QC - NiReports

README

        

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*NiReports*: the *NiPreps*' reporting and visualization tools

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*NiReports* contains the two main components of the *visual reporting system* of *NiPreps*:

* **Reportlets**: visualizations for assessing the quality of a particular processing step within the neuroimaging pipeline.

  Typically, reportlets show brain mosaics perhaps with contours and/or segmentations.

  They can be *dynamic* and flicker between two different *states* to help assess the accuracy of image registrations.

  However, the reportlets are not limited to brain mosaics, and can contain correlation plots, BOLD fMRI *carpetplots*, etc.

* **Assembler**: end-user *NiPreps* write out reportlets to a predetermined folder, which is then queried by the assembler using *PyBIDS*.

  The assembler follows a *report specification* in YAML format, which states the query to find specific reportlets and their corresponding metadata and text annotations.

  As a result, one HTML file with a concatenation of reportlets is produced.