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awesoMRI-QC

A curated list of measures, tools, and references for MRI quality control (QC).
https://github.com/FCP-INDI/awesoMRI-QC

Last synced: 1 day ago
JSON representation

Tools
- QC metric and report generation
  - MRQy
  - QAP
  - fBIRN QA tools
- MRI analysis packages with built-in QC
  - DPABI
  - `3dToutcount`
  - `3dTqual`
  - FSL
  - C-PAC
  - DPABI
  - DSI Studio
- QC at scale
  - NiRV
  - NiReports
  - SQAN
- QC web platforms
  - MindControl
  - Braindr
  - dmriprep-viewer
  - MIQA
  - Fibr
  - dmriprep-viewer
- Automated QC with machine learning
  - Qoala-T - T is a
  - mriqc-learn
- General-purpose image quality estimation
  - sewar
  - awesome-image-quality-assessment
Measures
- Structural T1
  - Freesurfer - Klapwijk2019)) |
  - Euler–Lhulier formula - E + F`) | higher better | ([Rosen et al., 2018](#ref-Rosen2018)), ([Dale et al., 1999](#ref-Dale1999)), [Freesurfer](https://surfer.nmr.mgh.harvard.edu/fswiki) |
  - Freesurfer
- Functional BOLD
  - MRIQC - Jenkinson2002)), ([Power et al., 2012](#ref-Power2012)) |
  - AFNI
  - XCP
- Diffusion weighted imaging (DWI)
  - QSIprep - studio.labsolver.org/), ([Schilling et al., 2019](#ref-Schilling2019)) |

Programming Languages

Python 3 JavaScript 3 Vue 2 TeX 1 R 1

Categories

Tools 23 Measures 7

Sub Categories

MRI analysis packages with built-in QC 7 QC web platforms 6 Functional BOLD 3 QC metric and report generation 3 Structural T1 3 QC at scale 3 General-purpose image quality estimation 2 Automated QC with machine learning 2 Diffusion weighted imaging (DWI) 1

Keywords

machine-learning 2 mri 2 quality-control 2 quality-metrics 2 imaging 1 medical-image-processing 1 medical-imaging 1 medical-physics 1 python 1 quality-assurance 1 freesurfer 1 image-processing 1 super-resolution 1 awesome 1 awesome-list 1 blind-image-quality-assessment 1 image-quality-assessment 1 iqa 1 iqa-dataset 1