https://github.com/nlesc/litstudy

LitStudy: Using the power of Python to automate scientific literature analysis from the comfort of a Jupyter notebook
https://github.com/nlesc/litstudy

bibliographics bibliometric-analysis bibliometric-visualization bibliometrics jupyter literature-review literature-review-tool literature-search python scientometrics systematic-literature-reviews systematic-reviews

Last synced: 6 months ago
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LitStudy: Using the power of Python to automate scientific literature analysis from the comfort of a Jupyter notebook

• Host: GitHub
• URL: https://github.com/nlesc/litstudy
• Owner: NLeSC
• License: apache-2.0
• Created: 2019-09-04T12:19:05.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2024-04-22T16:44:59.000Z (over 1 year ago)
• Last Synced: 2024-04-24T04:12:48.259Z (over 1 year ago)
• Topics: bibliographics, bibliometric-analysis, bibliometric-visualization, bibliometrics, jupyter, literature-review, literature-review-tool, literature-search, python, scientometrics, systematic-literature-reviews, systematic-reviews
• Language: Python
• Homepage: https://nlesc.github.io/litstudy/
• Size: 18 MB
• Stars: 133
• Watchers: 7
• Forks: 42
• Open Issues: 26
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md
  • Citation: CITATION.cff

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README

          
# LitStudy

![Logo](https://raw.githubusercontent.com/nlesc/litstudy/master/docs/logo.png#gh-light-mode-only)

[![github](https://img.shields.io/badge/github-repo-000.svg?logo=github&labelColor=gray&color=blue)](https://github.com/NLeSC/litstudy/)

[![DOI](https://zenodo.org/badge/206312286.svg)](https://zenodo.org/badge/latestdoi/206312286)

[![License](https://img.shields.io/github/license/nlesc/litstudy)](https://github.com/NLeSC/litstudy/blob/master/LICENSE)

[![Version](https://img.shields.io/pypi/v/litstudy)](https://pypi.org/project/litstudy/)

[![Build and Test](https://github.com/NLeSC/litstudy/actions/workflows/python-app.yml/badge.svg)](https://github.com/NLeSC/litstudy/actions/)

LitStudy is a Python package that enables analysis of scientific literature from the comfort of a Jupyter notebook. It provides the ability to select scientific publications and study their metadata through the use of visualizations, network analysis, and natural language processing.

In essence, this package offers five main features:

* Extract metadata from scientific documents sourced from various locations. The data is presented in a standardized interface, allowing for the combination of data from different sources.

* Filter, select, deduplicate, and annotate collections of documents.

* Compute and plot general statistics for document sets, such as statistics on authors, venues, and publication years.

* Generate and plot various bibliographic networks as interactive visualizations.

* Topic discovery using natural language processing (NLP) allows for the automatic discovery of popular topics.

## Frequently Asked Questions

If you have any questions or run into an error, see the [_Frequently Asked Questions_](https://nlesc.github.io/litstudy/faq.html) section of the [documentation](https://nlesc.github.io/litstudy/).

If your question or error is not on the list, please check the [GitHub issue tracker](https://github.com/NLeSC/litstudy/issues) for a similar issue or

create a [new issue](https://github.com/NLeSC/litstudy/issues/new).

## Supported Source

LitStudy supports the following data sources. The table below lists which metadata is fully (✓) or partially (*) provided by each source.

| Name            | Title | Authors | Venue | Abstract | Citations      | References |

|-----------------|-------|---------|-------|----------|----------------|------------|

| [Scopus]          | ✓     | ✓       | ✓     | ✓        | ✓              | ✓

| [SemanticScholar] | ✓     | ✓       | ✓     | ✓        | * (count only) | ✓

| [CrossRef]        | ✓     | ✓       | ✓     | ✓        | * (count only) | ✓

| [DBLP]            | ✓     | ✓       | ✓     |          |                |

| [arXiv]           | ✓     | ✓       |       | ✓        |                |

| [IEEE Xplore]     | ✓     | ✓       | ✓     | ✓        | * (count only) |

| [Springer Link]   | ✓     | ✓       | ✓     | ✓        | * (count only) |

| CSV file        | ✓     | ✓       | ✓     | ✓        |                |

| bibtex file     | ✓     | ✓       | ✓     | ✓        |                |

| RIS file        | ✓     | ✓       | ✓     | ✓        |                |

[Scopus]: http://scopus.com/

[SemanticScholar]: https://www.semanticscholar.org/

[CrossRef]: https://www.crossref.org/

[DBLP]: https://dblp.org/

[arXiv]: https://arxiv.org/

[IEEE Xplore]: https://ieeexplore.ieee.org/

[Springer Link]: https://link.springer.com/

## Example

An example notebook is available in `notebooks/example.ipynb` and [here](https://nlesc.github.io/litstudy/example.html).

[![Example notebook](https://raw.githubusercontent.com/NLeSC/litstudy/master/docs/images/notebook.png)](https://github.com/NLeSC/litstudy/blob/master/notebooks/example.ipynb)

## Installation Guide

LitStudy is available on PyPI!

Full installation guide is available [here](https://nlesc.github.io/litstudy/installation.html).

```bash

pip install litstudy

```

Or install the latest development version directly from GitHub:

```bash

pip install git+https://github.com/NLeSC/litstudy

```

## Documentation

Documentation is available [here](https://nlesc.github.io/litstudy/).

## Requirements

The package has been tested for Python 3.7. Required packages are available in `requirements.txt`.

`litstudy` supports several data sources.

Some of these sources (such as semantic Scholar, CrossRef, and arXiv) are openly available.

However to access the Scopus API, you (or your institute) requires a Scopus subscription and you need to request an Elsevier Developer API key (see [Elsevier Developers](https://dev.elsevier.com/index.jsp)).

For more information, see the [guide](https://pybliometrics.readthedocs.io/en/stable/access.html) by `pybliometrics`.

## License

Apache 2.0. See [LICENSE](https://github.com/NLeSC/litstudy/blob/master/LICENSE).

## Change log

See [CHANGELOG.md](https://github.com/NLeSC/litstudy/blob/master/CHANGELOG.md).

## Contributing

See [CONTRIBUTING.md](https://github.com/NLeSC/litstudy/blob/master/CONTRIBUTING.md).

## Citation

If you use LitStudy in your work, please cite the following publication:

> S. Heldens, A. Sclocco, H. Dreuning, B. van Werkhoven, P. Hijma, J. Maassen & R.V. van Nieuwpoort (2022), "litstudy: A Python package for literature reviews", SoftwareX 20

As BibTeX:

```Latex

@article{litstudy,

    title = {litstudy: A Python package for literature reviews},

    journal = {SoftwareX},

    volume = {20},

    pages = {101207},

    year = {2022},

    issn = {2352-7110},

    doi = {https://doi.org/10.1016/j.softx.2022.101207},

    url = {https://www.sciencedirect.com/science/article/pii/S235271102200125X},

    author = {S. Heldens and A. Sclocco and H. Dreuning and B. {van Werkhoven} and P. Hijma and J. Maassen and R. V. {van Nieuwpoort}},

}

```

## Related work

Don't forget to check out these other amazing software packages!

* [ScientoPy](https://www.scientopy.com/): Open-source Python based scientometric analysis tool.

* [pybliometrics](https://github.com/pybliometrics-dev/pybliometrics): API-Wrapper to access Scopus.

* [ASReview](https://asreview.nl/): Active learning for systematic reviews.

* [metaknowledge](https://github.com/UWNETLAB/metaknowledge): Python library for doing bibliometric and network analysis in science.

* [tethne](https://github.com/diging/tethne): Python module for bibliographic network analysis.

* [VOSviewer](https://www.vosviewer.com/): Software tool for constructing and visualizing bibliometric networks.