https://github.com/nylander/ptemplate

ptemplate -- A project template
https://github.com/nylander/ptemplate

Last synced: 8 months ago
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ptemplate -- A project template

• Host: GitHub
• URL: https://github.com/nylander/ptemplate
• Owner: nylander
• Created: 2016-01-25T14:45:22.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2024-01-25T11:18:11.000Z (over 2 years ago)
• Last Synced: 2024-01-26T12:11:19.761Z (over 2 years ago)
• Language: Shell
• Size: 11.7 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# ptemplate - A project template

- Last modified: tor jan 25, 2024  12:17

- Sign: JN

Inspired by [A Quick Guide to Organizing Computational Biology

Projects](http://dx.doi.org/10.1371/journal.pcbi.1000424)

To initialize a new `project`, run these three steps:

    $ git clone https://github.com/nylander/ptemplate.git project

    $ cd project

    $ sh bin/init.sh

This will create the following file structure:

    ptemplate/

    ├── analyses

    │   └── README.md

    ├── bin

    │   ├── fasta2tab

    │   ├── README.md

    │   └── tab2fasta

    ├── data

    │   └── README.md

    ├── doc

    │   └── README.md

    ├──.editorconfig

    ├──.gitignore

    ├──.git/

    ├── old/

    ├── raw-data

    │   └── README.md

    ├── README.md

    ├── results

    │   └── README.md

    ├── src

    │   ├── fasta_parser.pl

    │   ├── fasta_parser.py

    │   └── README.md

    └── tmp/

Files are set under version control (git), except folders `raw-data/`, `old/`

and `tmp/`. This can be changed by editing the `.gitignore` file (see

).

Furthermore, project-specific file-formatting settings for editors can be set

using the `.editorconfig` file (see ).