https://github.com/oniani/covid-19-network

Code for the Paper "Constructing Co-occurrence Network Embeddings to Assist Association Extraction for COVID-19 and Other Coronavirus Infectious Diseases"
https://github.com/oniani/covid-19-network

artificial-intelligence coronavirus covid-19 graph-neural-networks node2vec

Last synced: about 2 months ago
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Code for the Paper "Constructing Co-occurrence Network Embeddings to Assist Association Extraction for COVID-19 and Other Coronavirus Infectious Diseases"

• Host: GitHub
• URL: https://github.com/oniani/covid-19-network
• Owner: oniani
• Created: 2020-04-10T15:34:31.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2023-06-04T05:39:48.000Z (over 1 year ago)
• Last Synced: 2023-06-04T07:21:34.491Z (over 1 year ago)
• Topics: artificial-intelligence, coronavirus, covid-19, graph-neural-networks, node2vec
• Language: Python
• Homepage:
• Size: 17.2 MB
• Stars: 2
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# covid-19-network

We constructed network embeddings for COVID-19 by applying the node2vec model

over a co-occurrence network derived from the [CORD-19-on-FHIR](https://github.com/fhircat/CORD-19-on-FHIR)

dataset.

Additional code can be found at [covid-19-network-embeddings](https://github.com/shenfc/COVID-19-network-embeddings).

## Paper

Our work has been published at [Journal of the American Medical Informatics Association (JAMIA)](https://academic.oup.com/jamia)

and is available [at this link: https://academic.oup.com/jamia/article/doi/10.1093/jamia/ocaa117/5847598](https://academic.oup.com/jamia/article/doi/10.1093/jamia/ocaa117/5847598).

## Visualization

The network is visualized using [Bokeh](https://bokeh.org/) and is available

[here: https://www.davidoniani.com/covid-19-network](https://www.davidoniani.com/covid-19-network).

## Developers

[covid-19-network][covid-19-network] has been developed by [David Oniani][david] and

[Dr. Feichen Shen][drshen].

## Implementation

[covid-19-network][covid-19-network] has been implemented by [David Oniani][david].

### Collaborators

[Dr. Guoqian Jiang][drgiang] and [Dr. Hongfang Liu][drliu]

## References

- [node2vec](https://github.com/aditya-grover/node2vec)

- [Link Prediction Experiments](https://github.com/lucashu1/link-prediction)

[david]: https://www.davidoniani.com/

[drshen]: https://scholar.google.com/citations?user=E3tSCNYAAAAJ

[drgiang]: https://www.mayo.edu/research/faculty/jiang-guoqian-m-d-ph-d/bio-00093912

[drliu]: https://www.mayo.edu/research/faculty/jiang-guoqian-m-d-ph-d/bio-00093912

[covid-19-network]: https://github.com/oniani/covid-19-network