https://github.com/openworm/org.geppetto.simulator.external

Geppetto bundle to add support for external neuronal simulators (NEURON, etc.)
https://github.com/openworm/org.geppetto.simulator.external

Last synced: 4 months ago
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Geppetto bundle to add support for external neuronal simulators (NEURON, etc.)

• Host: GitHub
• URL: https://github.com/openworm/org.geppetto.simulator.external
• Owner: openworm
• License: other
• Created: 2015-01-26T15:49:45.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2022-12-16T04:23:50.000Z (over 3 years ago)
• Last Synced: 2025-02-16T07:16:37.954Z (over 1 year ago)
• Language: Python
• Homepage: http://geppetto.org
• Size: 51.2 MB
• Stars: 3
• Watchers: 21
• Forks: 1
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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org.geppetto.simulator.external

======================================

Geppetto Simulator Bundle for External Services

[OpenWorm Project](http://openworm.org)

Installation

------------

* Install NEURON (check the [.travis.yml](.travis.yml) for detailed instructions on this and other dependencies)

* Don't forget to set the NEURON_HOME environment variable to the bin directory.  The final location may be under a directory like x86_64 after build has completed.

* Install the latest versions of NetPyNE, libNeuroML and pyNeuroML, e.g. `pip install libneuroml --update`.

* Install jNeuroML (`svn checkout svn://svn.code.sf.net/p/neuroml/code/jNeuroMLJar`) and set JNML_HOME.

* Fill in paths for your system pointing at the location of NEURON's bin directory and the directory containing jNeuroML's jnml in the [app-config.xml file](https://github.com/openworm/org.geppetto.simulator.external/blob/556c4ee4a1520a50be7fda9b827399c6be2d6faa/src/main/java/META-INF/spring/app-config.xml#L24) (multiple places)

* Set the [aws.credentials file up correctly](http://docs.geppetto.org/en/latest/persistence.html#setting-up-for-amazon-s3-support)