https://github.com/orangeSi/biokits

bioinformatics tools
https://github.com/orangeSi/biokits

bioinformatics fasta

Last synced: 3 months ago
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bioinformatics tools

• Host: GitHub
• URL: https://github.com/orangeSi/biokits
• Owner: orangeSi
• Created: 2019-11-21T09:57:24.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2022-09-21T03:00:26.000Z (about 3 years ago)
• Last Synced: 2025-05-01T17:31:44.533Z (6 months ago)
• Topics: bioinformatics, fasta
• Language: Crystal
• Size: 11.2 MB
• Stars: 4
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
## biokits

### fxlength: output every sequence length for fasta/fastq format file or stdin

```

$cat ref.fa

>c1

ATCGA

>c2

ATCG

$zcat ref.fa.gz

>c1

ATCGA

>c2

ATCG

$zcat demo.fq.gz

@fqid1

ATCG

+

9999

@fqid2

ATCGC

+

99999

$./fxlength demo.fq.gz

4	fqid1

5	fqid2

$./fxlength ref.fa

5	c1

4	c2

$./fxlength ref.fa.gz

5	c1

4	c2

$zcat demo.fq.gz|./fxlength -

4	fqid1

5	fqid2

$cat ref.fa|./fxlength -

5	c1

4	c2

$zcat ref.fa.gz|./fxlength -

5	c1

4	c2

$ldd fxlength

	not a dynamic executable

```