https://github.com/ozankiratli/haploid-bottleneck

An individual based simulation for haploid populations with bottlenecking feature
https://github.com/ozankiratli/haploid-bottleneck

cplusplus simulation-modeling

Last synced: 11 months ago
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An individual based simulation for haploid populations with bottlenecking feature

• Host: GitHub
• URL: https://github.com/ozankiratli/haploid-bottleneck
• Owner: ozankiratli
• Created: 2016-03-23T23:44:28.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2024-06-26T22:20:34.000Z (almost 2 years ago)
• Last Synced: 2025-01-13T12:19:19.003Z (over 1 year ago)
• Topics: cplusplus, simulation-modeling
• Language: C++
• Homepage:
• Size: 23.4 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

          
# haploid-bottleneck

An individual based simulation for haploid populations with bottlenecking feature. 

UNDER DEVELOPMENT

*** First working copy

*** Bash script development is in progress

*** A full user manual and instructions will be available soon. 

Instructions:

LINUX:

- copy "simulation.cpp", "build.sh", and "run.sh" to same folder. 

- Change parameters according to your needs in build.sh

- change mode of build.sh and run.sh to 755 or +x with chmod +x build.sh

- run build.sh with intended number of replicates, (default=20)  "./build.sh 5"

- run run.sh with intended number of threads (default=1) "./run.sh 2"

P.S. I haven't developed this project for some time, but if you need help with it, send me an [email](mailto:ozankiratli@protonmail.com).