https://github.com/pasmopy/breast_cancer

A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
https://github.com/pasmopy/breast_cancer

breast-cancer breast-cancer-classification breast-cancer-prediction cancer ccle digital-twin in-silico-clinical-trial patient-specific-modeling precision-oncology prognostic-biomarkers stratification systems-biology-simulation tcga

Last synced: 2 months ago
JSON representation

A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).

• Host: GitHub
• URL: https://github.com/pasmopy/breast_cancer
• Owner: pasmopy
• License: apache-2.0
• Created: 2021-03-16T04:05:57.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2024-10-19T16:33:37.000Z (over 1 year ago)
• Last Synced: 2025-09-05T01:37:44.733Z (9 months ago)
• Topics: breast-cancer, breast-cancer-classification, breast-cancer-prediction, cancer, ccle, digital-twin, in-silico-clinical-trial, patient-specific-modeling, precision-oncology, prognostic-biomarkers, stratification, systems-biology-simulation, tcga
• Language: Python
• Homepage: https://www.cell.com/iscience/fulltext/S2589-0042(22)00214-0
• Size: 302 MB
• Stars: 6
• Watchers: 2
• Forks: 5
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Code of conduct: .github/CODE_OF_CONDUCT.md
  • Citation: CITATION.cff

Awesome Lists containing this project

README

          
# The Pasmopy Project: Breast Cancer

[![Actions Status](https://github.com/pasmopy/breast_cancer/workflows/Tests/badge.svg)](https://github.com/pasmopy/breast_cancer/actions)

[![License](https://img.shields.io/badge/License-Apache%202.0-green.svg?logo=apache)](https://opensource.org/licenses/Apache-2.0)

[![iScience Paper](https://img.shields.io/badge/DOI-10.1016%2Fj.isci.2022.103944-blue)](https://doi.org/10.1016/j.isci.2022.103944)

[![overview](https://raw.githubusercontent.com/pasmopy/pasmopy/master/docs/_static/img/overview.png)](https://pasmopy.readthedocs.io)

This repository contains modeling and analysis code for the following paper:

- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944

## Installation

Clone the package:

```shell

$ git clone https://github.com/pasmopy/breast_cancer.git

```

## Getting Started

- Online documentation is hosted on GitHub Pages: https://pasmopy.github.io/breast_cancer.

- Please also refer to the method paper: https://doi.org/10.1016/j.xpro.2022.101619.

## Author

- Hiroaki Imoto

- Sawa Yamashiro

## License

1. Code license

   Licensed under the [Apache License, Version 2.0](https://www.apache.org/licenses/LICENSE-2.0). For details, see the [LICENSE](LICENSE) file.

2. Model parameters license

   The model parameters are made available under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license. You can find details at: https://creativecommons.org/licenses/by-nc-nd/4.0