https://github.com/pbenner/adaptive-sampling

Multibin adaptive sampling library
https://github.com/pbenner/adaptive-sampling

Last synced: about 1 month ago
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Multibin adaptive sampling library

• Host: GitHub
• URL: https://github.com/pbenner/adaptive-sampling
• Owner: pbenner
• License: gpl-2.0
• Created: 2013-05-10T07:47:13.000Z (about 13 years ago)
• Default Branch: master
• Last Pushed: 2013-05-10T08:04:32.000Z (about 13 years ago)
• Last Synced: 2025-03-02T08:13:53.358Z (over 1 year ago)
• Language: C
• Homepage:
• Size: 14.4 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: COPYING

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README

          
## Installation

For local installations, say $HOME/.usr, remember to set the following

environment variables:

	export PATH="$HOME/.usr/bin:$PATH"

	export CPATH=$HOME/.usr/include

	export LD_LIBRARY_PATH=$HOME/.usr/lib:$LD_LIBRARY_PATH

	export LIBRARY_PATH=$LD_LIBRARY_PATH

	export MANPATH=$HOME/.usr/share/man:$MANPATH

and then compile with

	./configure --prefix=$HOME/.usr

	make

	make install

## Binning examples

	bayesian-binning -v -b -m data/binning/data1.cfg

	bayesian-binning -m --which=1 data/binning/data1.cfg

	bayesian-binning -v -b -m data/binning-spikes/data1.cfg

	bayesian-binning -v -b -m --save=data/binning-spikes/data1.result data/binning-spikes/data1.cfg

	bayesian-binning -v -b -m --load=data/binning-spikes/data1.result data/binning-spikes/data1.cfg

	bayesian-binning -v -b -m -r '(0,0.1)' -s 0.001 --save=data/binning-spikes/data1.result data/binning-spikes/data1.cfg

	bayesian-binning -v -b --threads=42 G833C11R4_2tone-PSTH_Exci.cfg

## Adaptive sampling examples

	adaptive-sampling -n  10 -m data/sampling/data1.cfg

	adaptive-sampling -n  10 -m --save=data/sampling/data1.result1 data/sampling/data1.cfg

	adaptive-sampling -n  90 -m --load=data/sampling/data1.result1 --save=data/sampling/data1.result2 data/sampling/data1.cfg

	adaptive-sampling -n 100 -m --load=data/sampling/data1.result2 --save=data/sampling/data1.result3 data/sampling/data1.cfg

	adaptive-sampling -m --load=data/sampling/data1.result3 data/sampling/data1.cfg

	adaptive-sampling -n 100 -m --plot-utility data/sampling/data1.cfg

	adaptive-sampling -m -n 400 --strategy=uniform --save=data/sampling/data1.result4 data/sampling/data1.cfg

	adaptive-sampling -n 5 -m --strategy=effective-counts data/sampling/data4.cfg 2>/dev/null

	adaptive-sampling -n 5 -m --strategy=kl-divergence data/sampling/data4.cfg 2>/dev/null

	adaptive-sampling -n 5 -m --strategy=kl-divergence --kl-multibin data/sampling/data4.cfg 2>/dev/null