https://github.com/pbenner/modhmm-segmentations

ModHMM Segmentations Repository
https://github.com/pbenner/modhmm-segmentations

Last synced: 3 months ago
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ModHMM Segmentations Repository

• Host: GitHub
• URL: https://github.com/pbenner/modhmm-segmentations
• Owner: pbenner
• Created: 2019-06-24T12:58:02.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2020-05-11T11:02:40.000Z (about 6 years ago)
• Last Synced: 2025-11-30T16:23:49.134Z (6 months ago)
• Language: Makefile
• Size: 189 MB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

          
Tissue | Version | Segmentation | Posteriors | Config | Comment

-------|---------|--------------|------------|--------|--------

GRCh38 ascending aorta | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-ascending-aorta/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-ascending-aorta/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-ascending-aorta.json) | total RNA-seq

GRCh38 gastrocnemius medialis | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-gastrocnemius-medialis/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-gastrocnemius-medialis/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-gastrocnemius-medialis.json) | total RNA-seq

GRCh38 heart left ventricle | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-heart-left-ventricle/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-heart-left-ventricle/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-heart-left-ventricle.json) | total RNA-seq

GRCh38 lung upper lobe | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-lung-upper-lobe/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-lung-upper-lobe/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-lung-upper-lobe.json) | total RNA-seq

GRCh38 pancreas body | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-pancreas-body/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-pancreas-body/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-pancreas-body.json) | total RNA-seq

GRCh38 spleen | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-spleen/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-spleen/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-spleen.json) | total RNA-seq

GRCh38 stomach | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-stomach/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-stomach/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-stomach.json) | total RNA-seq

GRCh38 tibial nerve | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-tibial-nerve/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-tibial-nerve/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-tibial-nerve.json) | total RNA-seq

GRCh38 transverse colon | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-transverse-colon/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-transverse-colon/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-transverse-colon.json) | total RNA-seq

GRCh38 uterus | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-uterus/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/GRCh38-uterus/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/GRCh38-uterus.json) | total RNA-seq

mm10 forebrain embryo day11.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day11.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day11.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day11.5.json) | poly-A RNA-seq

mm10 forebrain embryo day12.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day12.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day12.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day12.5.json) | poly-A RNA-seq

mm10 forebrain embryo day13.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day13.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day13.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day13.5.json) | poly-A RNA-seq

mm10 forebrain embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day14.5.json) | poly-A RNA-seq

mm10 forebrain embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day15.5.json) | poly-A RNA-seq

mm10 forebrain embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-forebrain-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-forebrain-embryo-day16.5.json) | poly-A RNA-seq

mm10 heart embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-heart-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-heart-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-heart-embryo-day14.5.json) | poly-A RNA-seq

mm10 heart embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-heart-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-heart-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-heart-embryo-day15.5.json) | poly-A RNA-seq

mm10 hindbrain embryo day11.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day11.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day11.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day11.5.json) | poly-A RNA-seq

mm10 hindbrain embryo day12.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day12.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day12.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day12.5.json) | poly-A RNA-seq

mm10 hindbrain embryo day13.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day13.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day13.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day13.5.json) | poly-A RNA-seq

mm10 hindbrain embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day14.5.json) | poly-A RNA-seq

mm10 hindbrain embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day15.5.json) | poly-A RNA-seq

mm10 hindbrain embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-hindbrain-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-hindbrain-embryo-day16.5.json) | poly-A RNA-seq

mm10 kidney embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-kidney-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day14.5.json) | poly-A RNA-seq

mm10 kidney embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-kidney-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day15.5.json) | poly-A RNA-seq

mm10 kidney embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-kidney-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-kidney-embryo-day16.5.json) | poly-A RNA-seq

mm10 limb embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-limb-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-limb-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-limb-embryo-day14.5.json) | poly-A RNA-seq

mm10 limb embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-limb-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-limb-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-limb-embryo-day15.5.json) | poly-A RNA-seq

mm10 liver embryo day11.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day11.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day11.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day11.5.json) | poly-A RNA-seq

mm10 liver embryo day12.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day12.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day12.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day12.5.json) | poly-A RNA-seq

mm10 liver embryo day13.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day13.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day13.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day13.5.json) | poly-A RNA-seq

mm10 liver embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day14.5.json) | poly-A RNA-seq

mm10 liver embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day15.5.json) | poly-A RNA-seq

mm10 liver embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-liver-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-liver-embryo-day16.5.json) | poly-A RNA-seq

mm10 lung embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-lung-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day14.5.json) | poly-A RNA-seq

mm10 lung embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-lung-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day15.5.json) | poly-A RNA-seq

mm10 lung embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-lung-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-lung-embryo-day16.5.json) | poly-A RNA-seq

mm10 midbrain embryo day11.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day11.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day11.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day11.5.json) | poly-A RNA-seq

mm10 midbrain embryo day12.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day12.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day12.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day12.5.json) | poly-A RNA-seq

mm10 midbrain embryo day13.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day13.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day13.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day13.5.json) | poly-A RNA-seq

mm10 midbrain embryo day14.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day14.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day14.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day14.5.json) | poly-A RNA-seq

mm10 midbrain embryo day15.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day15.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day15.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day15.5.json) | poly-A RNA-seq

mm10 midbrain embryo day16.5 | 1.2.3 | [Segmentation](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day16.5/segmentation.bed.gz) |   [Posteriors](https://owww.molgen.mpg.de/~benner/pool/modhmm/mm10-midbrain-embryo-day16.5/) |       [Config](https://github.com/pbenner/modhmm-segmentations/raw/master/mm10-midbrain-embryo-day16.5.json) | poly-A RNA-seq