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https://github.com/plashchynski/awesome-genetics

A curated list of awesome personal genomics software, libraries, and educational resources.
https://github.com/plashchynski/awesome-genetics

List: awesome-genetics

23andme ancestry bioinformatics consumer-dna-test dna geneology genetics genomics health snpedia

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A curated list of awesome personal genomics software, libraries, and educational resources.

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# awesome-genetics

A curated list of awesome [personal genomics](https://en.wikipedia.org/wiki/Personal_genomics) and [genetic genealogy](https://en.wikipedia.org/wiki/Genetic_genealogy) software, services, libraries, and educational resources.



## Essentials

### Education and courses

* [SNPedia](http://snpedia.org/) — A wiki investigating human genetics.

* [Bioinformatics for Beginners](https://www.coursera.org/learn/bioinformatics/home/welcome) — Coursera's introductory course to the field of bioinformatics

* [The National Center for Biotechnology Information](https://www.ncbi.nlm.nih.gov/) — advances science and health by providing access to biomedical and genomic information

* [Harvard Medical School Online](https://onlinelearning.hms.harvard.edu/hmx/)

* [Introduction to Biology - The Secret of Life by Edx](https://www.edx.org/course/introduction-to-biology-the-secret-of-life-3)

* [Path to a free self-taught education in Bioinformatics](https://github.com/ossu/bioinformatics)



### Offline Tools

* [chrchang/plink-ng](https://github.com/chrchang/plink-ng) — [PLINK](https://en.wikipedia.org/wiki/PLINK_(genetic_tool-set)) association analysis toolset [home page](https://www.cog-genomics.org/plink/)

* [vcftools/vcftools](https://github.com/vcftools/vcftools) — A set of tools written in Perl and C++ for working with [VCF](https://en.wikipedia.org/wiki/Variant_Call_Format) files

* [samtools/bcftools](https://github.com/samtools/bcftools) — Utilities for variant calling and manipulating VCFs and BCFs by [HTSlib](http://www.htslib.org/)

* [samtools/samtools](https://github.com/samtools/samtools) — Utilities for the [Sequence Alignment/Map (SAM)](https://en.wikipedia.org/wiki/SAM_(file_format)) format by [HTSlib](http://www.htslib.org/)

* [arrogantrobot/23andme2vcf](https://github.com/arrogantrobot/23andme2vcf) — Convert a 23andme raw file to [VCF](https://en.wikipedia.org/wiki/Variant_Call_Format) (Perl)

* [23andMe/seqseek](https://github.com/23andMe/seqseek) — Easy access to human reference genome sequences (Python)



### Online tools

* [varsome.com](https://varsome.com/) — The Human Genomic Variant Search Engine



## Health and traits

### Knowledge

* [Genetics Home Reference](https://ghr.nlm.nih.gov/) — consumer-friendly information about the effects of genetic variation on human health



### Online tools

* [Codegen](https://codegen.eu/) — A free comprehensive health report using consumer DNA raw files.

* [Promethease](http://promethease.com/) — Generates health and trait reports based on [SNPedia](http://snpedia.org/) (paid)

* [Genomelink](https://genomelink.io/) — Health and traits reports based on DNA raw files.



## Genetic genealogy

### Knowledge

* [ISOGG Wiki](https://isogg.org/wiki/Wiki_Welcome_Page) — International Society of Genetic Genealogy Wiki

* [Beginners guide to genetic genealogy](https://sites.google.com/site/wheatonsurname/beginners-guide-to-genetic-genealogy)



### Offline tools

* [apriha/lineage](https://github.com/apriha/lineage) — Tools for genetic genealogy and the analysis of consumer DNA test results (Python)

* [23andMe/yhaplo](https://github.com/23andMe/yhaplo) — Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men (Python)



### Online tools

* [GEDmatch](https://www.gedmatch.com/) — GEDmatch is a free online toolset to compare autosomal DNA data files

* [DNA.Land](https://dna.land/) — The site offers a biogeographical analysis, imputation and a relative-matching feature

* [David Pike's Tools](http://www.math.mun.ca/~dapike/FF23utils/) — Utilities for analysing raw DNA data (JS)

* [Shared cM Project](https://dnapainter.com/tools/sharedcmv4) — Visualize relationship probabilities based on centimorgans



## Additional Geneology Researh Resources



### Books

* [Passenger and immigration lists index](https://archive.org/details/passengerimmigra0000filb/mode/2up) - A guide to published arrival records of 300,000 passengers who came to the United States and Canada in the seventeenth, eighteenth, and nineteenth centuries

* [Passenger lists of ships coming to North America, 1607-1825](https://archive.org/details/passengerlistsof00lanc/page/8/mode/2up) - list of ships

* [Cavaliers and Pioneers A CALENDAR OF VIRGINIA LAND GRANTS 1800 Vol. I. No. 1.](https://archive.org/details/cavalierspioneer1135nuge/mode/2up) - Virginia Land Grants

* [Cavaliers and Pioneers A CALENDAR OF VIRGINIA LAND GRANTS 1800 Vol. I. No. 4 - PDF](https://ia600604.us.archive.org/6/items/cavalierspioneer14nuge/cavalierspioneer14nuge.pdf) - Virgina Land Grants



 

### Country and state databases



#### United States



#### State Archieve Searches

* [Illinois](https://www.ilsos.gov/departments/archives/home.html)

* [Maryland](https://query.msa.maryland.gov/texis/search/)

* [Massachusetts](http://digitalarchives.sec.state.ma.us/)

* [North Carolina](https://archives.ncdcr.gov/)

* [South Carolina](http://www.usgwarchives.net/search/search.cgi/searchsc.htm)

* [Tennessee](https://tslaindexes.tn.gov/)

* [Virginia](https://lva.primo.exlibrisgroup.com/discovery/search)