https://github.com/pmassicotte/eemr

Utilities for pre-processing emission-excitation-matrix (EEM).
https://github.com/pmassicotte/eemr

dissolved-organic-matter emission excitation fluorescence optics

Last synced: 2 months ago
JSON representation

Utilities for pre-processing emission-excitation-matrix (EEM).

• Host: GitHub
• URL: https://github.com/pmassicotte/eemr
• Owner: PMassicotte
• Created: 2015-10-09T12:25:55.000Z (about 9 years ago)
• Default Branch: main
• Last Pushed: 2021-10-19T10:54:00.000Z (about 3 years ago)
• Last Synced: 2024-10-02T21:05:41.501Z (3 months ago)
• Topics: dissolved-organic-matter, emission, excitation, fluorescence, optics
• Language: R
• Homepage:
• Size: 5.63 MB
• Stars: 19
• Watchers: 12
• Forks: 10
• Open Issues: 14
• Metadata Files:
  • Readme: README.Rmd

Awesome Lists containing this project

README

        
---

output:

  github_document:

    html_preview: true

---

```{r, echo = FALSE}

knitr::opts_chunk$set(

  fig.path = "inst/images/README-"

)

```

## eemR

[![Package-License](https://img.shields.io/badge/license-GPL%20%28%3E=%202%29-brightgreen.svg?style=flat)](http://www.gnu.org/licenses/gpl-2.0.html) [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/eemR)](https://cran.r-project.org/package=eemR) [![Downloads](http://cranlogs.r-pkg.org/badges/eemR?color=brightgreen)](https://www.r-pkg.org:443/pkg/eemR) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3257526.svg)](https://doi.org/10.5281/zenodo.3257526)

[![Codecov test coverage](https://codecov.io/gh/PMassicotte/eemR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/PMassicotte/eemR?branch=main)

[![R build status](https://github.com/PMassicotte/eemR/workflows/R-CMD-check/badge.svg)](https://github.com/PMassicotte/eemR/actions)

The **eemR** package implements various functions used calculate metrics from excitation-emission matrix (EEM) as well as to preform pre-processing corrections before PARAFAC analysis.

The latest release of the package from CRAN can be installed with:

```{r, eval = FALSE}

install.packages("eemR")

```

The latest development version of the package can be installed with:

```{r install, eval = FALSE}

devtools::install_github("PMassicotte/eemR")

```

## Vignette

A detailed vignette presenting the package which can be viewed using:

```{r, eval = FALSE}

vignette(topic = "introduction", package = "eemR")

```

## Supported spectrophotometers

At the moment, EEMs generated by the following spectrofluorometer are officially supported.

- Cary Eclipse `.csv` files

- Aqualog `.dat` files

- Shimadzu `.TXT` files

- Fluoromax-4 `.dat` files

- Hitachi F-7000 FL `.TXT` files

EEM can be read using the `eem_read()` function. Please fill an [issue](https://github.com/PMassicotte/eemR/issues) if you have other file formats you would like to add to the package. You can also write your own [import function](http://pmassicotte.github.io/eemR/articles/custom-import-function.html)!