https://github.com/poisotlab/omnomnomivores

Sadly no omnomnomivores will be featured 😔
https://github.com/poisotlab/omnomnomivores

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Sadly no omnomnomivores will be featured 😔

• Host: GitHub
• URL: https://github.com/poisotlab/omnomnomivores
• Owner: PoisotLab
• License: mit
• Created: 2023-03-06T10:57:39.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-07-05T08:02:43.000Z (almost 2 years ago)
• Last Synced: 2025-12-31T21:57:26.663Z (5 months ago)
• Language: Julia
• Size: 12.7 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 6
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Omnomnomivores

"Never become desperate enough to trust the untrustworthy." ―Moral


The code associated with this repository is essentially taking the metacommunity

model from [Thompson and Gonzalez

2017](https://doi.org/10.1038/s41559-017-0162) and adding some modification

to the workflow to suit the specific research goals/questions. A high-level

visual summary of the model itself can be found below:

![](figures/Boundaries_model.png)

As for the research aims the idea is to use wombling to look at the rates of

change of networks/communities over varying degrees of landscape connectivity

and environmental effect. Essentially delivering us with a figure that looks

like this:

![](figures/heatmaps.png)

## REPO STRUCTURE

Code associated with the internal functioning of the metacommunity model can be found in 

`lib/`.

`01_full_simulation.jl` is where the process of generating the metacommunites can be found.

This includes a 'proofing' (burnin), baking (heating phase where landscape and environmental 

values are gradually changed), and cooling (where the final 'state' is kept steady to allow 

community dynamic to 'settle')

`02_wombling.jl` takes the outputs from the metacomunity simulations and implements the

relevant wombling related questions.