https://github.com/pwwang/scplotter
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
https://github.com/pwwang/scplotter
single-cell-analysis single-cell-rna-seq single-cell-sequencing visualization
Last synced: 3 months ago
JSON representation
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
- Host: GitHub
- URL: https://github.com/pwwang/scplotter
- Owner: pwwang
- License: gpl-3.0
- Created: 2024-09-03T23:03:11.000Z (10 months ago)
- Default Branch: master
- Last Pushed: 2025-03-19T15:01:43.000Z (3 months ago)
- Last Synced: 2025-03-29T11:05:39.733Z (3 months ago)
- Topics: single-cell-analysis, single-cell-rna-seq, single-cell-sequencing, visualization
- Language: R
- Homepage: https://pwwang.github.io/scplotter/
- Size: 81.1 MB
- Stars: 143
- Watchers: 1
- Forks: 17
- Open Issues: 5
-
Metadata Files:
- Readme: README.md
- License: LICENSE.md
Awesome Lists containing this project
README
# scplotter 
`scplotter` is an R package that is built upon [`plotthis`][1]. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
## Installation
```r
remotes::install_github("pwwang/scplotter")
# or
devtools::install_github("pwwang/scplotter")
# or using conda
$ conda install pwwang::r-scplotter
```
## Credits
`scplotter` draws significant inspiration from the [`SCP`][2] package, which separates visualization from analysis and implements it in the [`plotthis`][1] package. Building on `plotthis`, `scplotter` offers advanced functions for visualizing single-cell sequencing data. Special thanks to the [`scRepertoire`][21] package for its APIs that facilitate the analysis of single-cell TCR/BCR sequencing data.
## Gallery
### scRNA-seq
[`CellDimPlot`][3]
[`CellStatPlot`][4]
[`ClustreePlot`][5]
[`FeatureStatPlot`][6]
[`EnrichmentPlot`][7]
[`GSEASummaryPlot`][8] | [`GSEAPlot`][8]
[`VolcanoPlot`][9]
[`CCCPlot`][10] (Cell-Cell Communication Plot)
### scTCR-seq/scBCR-seq
[`ClonalVolumePlot`][11] | [`ClonalAbundancePlot`][12] | [`ClonalResidencyPlot`][13] | [`ClonalDynamicsPlot`][22] | [`ClonalCompositionPlot`][14] | [`ClonalOverlapPlot`][15] | [`ClonalGeneUsagePlot`][16]
[`ClonalRarefactionPlot`][17] | [`ClonalGeneUsagePlot`][18] | [`ClonalDiversityPlot`][19] | [`ClonalPositionalPlot`][20]
[1]: https://github.com/pwwang/plotthis
[2]: https://zhanghao-njmu.github.io/SCP/index.html
[3]: https://pwwang.github.io/scplotter/reference/CellDimPlot.html
[4]: https://pwwang.github.io/scplotter/reference/CellStatPlot.html
[5]: https://pwwang.github.io/scplotter/reference/ClustreePlot.html
[6]: https://pwwang.github.io/scplotter/reference/FeatureStatPlot.html
[7]: https://pwwang.github.io/scplotter/reference/EnrichmentPlot.html
[8]: https://pwwang.github.io/plotthis/reference/gsea.html
[9]: https://pwwang.github.io/plotthis/reference/VolcanoPlot.html
[10]: https://pwwang.github.io/scplotter/reference/CCCPlot.html
[11]: https://pwwang.github.io/scplotter/reference/ClonalVolumePlot.html
[12]: https://pwwang.github.io/scplotter/reference/ClonalAbundancePlot.html
[13]: https://pwwang.github.io/scplotter/reference/ClonalResidencyPlot.html
[14]: https://pwwang.github.io/scplotter/reference/ClonalCompositionPlot.html
[15]: https://pwwang.github.io/scplotter/reference/ClonalOverlapPlot.html
[16]: https://pwwang.github.io/scplotter/reference/ClonalGeneUsagePlot.html
[17]: https://pwwang.github.io/scplotter/reference/ClonalRarefactionPlot.html
[18]: https://pwwang.github.io/scplotter/reference/ClonalGeneUsagePlot.html
[19]: https://pwwang.github.io/scplotter/reference/ClonalDiversityPlot.html
[20]: https://pwwang.github.io/scplotter/reference/ClonalPositionalPlot.html
[21]: https://github.com/ncborcherding/scRepertoire
[22]: https://pwwang.github.io/scplotter/reference/ClonalDynamicsPlot.html