https://github.com/quadram-institute-bioscience/dadaist2

Dadaist2 🟨 Highway to R
https://github.com/quadram-institute-bioscience/dadaist2

16s amplicon-pipeline asv bioinformatics dada2 metabarcoding phyloseq taxonomy

Last synced: 3 months ago
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Dadaist2 🟨 Highway to R

• Host: GitHub
• URL: https://github.com/quadram-institute-bioscience/dadaist2
• Owner: quadram-institute-bioscience
• License: mit
• Created: 2020-05-02T08:34:14.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2025-03-07T08:40:30.000Z (about 1 year ago)
• Last Synced: 2026-01-27T10:35:16.410Z (4 months ago)
• Topics: 16s, amplicon-pipeline, asv, bioinformatics, dada2, metabarcoding, phyloseq, taxonomy
• Language: HTML
• Homepage: https://quadram-institute-bioscience.github.io/dadaist2/
• Size: 40.6 MB
• Stars: 13
• Watchers: 2
• Forks: 5
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

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README

          
# dadaist2

[![Dadaist2 logo](docs/img/dadaist2.png)](https://quadram-institute-bioscience.github.io/dadaist2/)

[![release](https://img.shields.io/github/v/release/quadram-institute-bioscience/dadaist2?label=github%20release)](https://github.com/quadram-institute-bioscience/dadaist2/releases)

[![version](

https://anaconda.org/bioconda/dadaist2/badges/version.svg)](https://bioconda.github.io/recipes/dadaist2/README.html)

[![Conda](https://anaconda.org/bioconda/dadaist2/badges/downloads.svg)](https://bioconda.github.io/recipes/dadaist2/README.html)

[![Dadaist-CI](https://github.com/quadram-institute-bioscience/dadaist2/actions/workflows/test-dadaist.yaml/badge.svg?branch=master)](https://github.com/quadram-institute-bioscience/dadaist2/actions/workflows/test-dadaist.yaml)

Standalone wrapper for [DADA2](https://benjjneb.github.io/dada2/index.html) package, to quickly generate a feature table and a

set of representative sequences from a folder with Paired End Illumina reads.

## [Dadaist2 stable](https://quadram-institute-bioscience.github.io/dadaist2)

Please check the [**legacy documentation**](https://quadram-institute-bioscience.github.io/dadaist1-docs/) and tutorials

for installation and usage notes.

### Dadaist2 2.x under development

Please check the [online documentation](https://quadram-institute-bioscience.github.io/dadaist2) for dev

## Cite 



Ansorge, R., Birolo, G., James, S. A., & Telatin, A. (2021). Dadaist2: A Toolkit to Automate and Simplify Statistical Analysis and Plotting of Metabarcoding Experiments. _International journal of molecular sciences_, 22(10), 5309. [10.3390/ijms22105309](https://doi.org/10.3390/ijms22105309)