https://github.com/raphaelvallat/conn_tools
Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
https://github.com/raphaelvallat/conn_tools
brain brain-network conn-toolbox connectivity fmri matrix-visualizer network-analysis neuroimaging neuroscience plot spm
Last synced: over 1 year ago
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Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
- Host: GitHub
- URL: https://github.com/raphaelvallat/conn_tools
- Owner: raphaelvallat
- Created: 2017-02-12T15:54:48.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2017-02-16T15:02:42.000Z (over 9 years ago)
- Last Synced: 2025-01-07T07:18:13.545Z (over 1 year ago)
- Topics: brain, brain-network, conn-toolbox, connectivity, fmri, matrix-visualizer, network-analysis, neuroimaging, neuroscience, plot, spm
- Language: Matlab
- Homepage: https://raphaelvallat.github.io/conn_plot.html
- Size: 9.77 KB
- Stars: 25
- Watchers: 3
- Forks: 9
- Open Issues: 1
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Metadata Files:
- Readme: README.md
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README
# conn_tools
Some tools born from practical needs during the analysis of ROI-to-ROI functional connectivity using the excellent [CONN Toolbox](https://www.nitrc.org/projects/conn).
### 1) Extract and plot brain networks connectivity matrix
Automatize the extraction and plotting of brain networks connectivity matrix from CONN results folder, using either Matlab or Python
Script:
#### MATLAB
extract_correl_mat.m
plot_correl_mat.m
#### Python
conn_correl_mat.py
### 2) Plot BOLD denoised timeseries of a pair of ROIs and compute the correlation coefficient
Script:
conn_plot_ts.m
## Tutorial & Examples
Please go [on my website](https://raphaelvallat.github.io/) for some tutorials about these functions