https://github.com/reubendo/slicerskinsegmentator
Slicer Module for Skin Segmentator
https://github.com/reubendo/slicerskinsegmentator
Last synced: 22 days ago
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Slicer Module for Skin Segmentator
- Host: GitHub
- URL: https://github.com/reubendo/slicerskinsegmentator
- Owner: ReubenDo
- License: mit
- Created: 2024-03-22T18:44:07.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-03-29T15:33:49.000Z (about 2 years ago)
- Last Synced: 2025-01-15T03:06:39.831Z (over 1 year ago)
- Language: Python
- Size: 255 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Skin surface Segmentation
This repository contains the code for a Slicer module that can be used to automatically extract the skin surface in various MR sequences (T1, post-contrast T1, T2, FLAIR).
This project was initiated during the [36th NA-MIC Project Week](https://projectweek.na-mic.org/PW36_2022_Virtual/Projects/SkinSegmentation/).
## Installation
## Requirements
You must install PyTorch before. The easiest way is to use the "PyTorch" module available in the "Extensions manager".
### Option 1
Clone this repository:
```shell
git clone https://github.com/ReubenDo/SlicerSkinSegmentator.git
```
### Option 2
[Download the zipped directory](https://github.com/ReubenDo/SlicerSkinSegmentator/archive/refs/heads/main.zip) and unzip it.
### Add directory in Slicer
In Slicer, go to `Edit -> Application Settings -> Modules` and add the cloned/downloaded folder to the `Additional module paths`. When prompted, restart Slicer.
## Algorithm description
TODO