https://github.com/rigdenlab/conkit

Contact Prediction ToolKit
https://github.com/rigdenlab/conkit

contact-prediction python

Last synced: 5 months ago
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Contact Prediction ToolKit

• Host: GitHub
• URL: https://github.com/rigdenlab/conkit
• Owner: rigdenlab
• License: bsd-3-clause
• Created: 2015-02-11T09:58:20.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2025-08-21T13:18:18.000Z (10 months ago)
• Last Synced: 2025-09-25T14:51:28.946Z (9 months ago)
• Topics: contact-prediction, python
• Language: Python
• Homepage: https://www.conkit.org/en/latest/
• Size: 13.5 MB
• Stars: 21
• Watchers: 3
• Forks: 9
• Open Issues: 4
• Metadata Files:
  • Readme: README.rst
  • Changelog: CHANGELOG.rst
  • License: LICENSE.txt

Awesome Lists containing this project

README

          
..

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Contact Prediction ToolKit

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**A Python Interface to Contact Predictions**

.. image:: https://img.shields.io/badge/DOI-10.1093%2Fbioinformatics%2Fbtx148-blue.svg

   :target: https://doi.org/10.1093/bioinformatics/btx148

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   :target: https://pypi.python.org/pypi/conkit

   :alt: PyPi Package

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   :target: https://pypi.python.org/pypi/conkit

   :alt: Python Versions

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   :target: https://conkit.readthedocs.io/en/latest/

   :alt: Documentation Status

.. image:: https://github.com/rigdenlab/conkit/workflows/Build/badge.svg

   :alt: Build Status

**NEW: Now ConKit is also compatible with residue-residue distance predictions**

ConKit is a Python library to provide a data object hierarchy and associated routine operations to

work and manipulate residue-residue contact prediction data. Main features shipped with this library

include:

- Parsers for Multiple Sequence Alignment, contact prediction and residue distance prediction files

- Analysis functions for Multiple Sequence Alignment, contact prediction data and residue distance prediction data

- Visualisation of Multiple Sequence Alignment, contact prediction data and residue distance prediction data

- Validation of models based on residue distance predictions

- Python wrappers for the contact-prediction-related software

For a general overview of ConKit, watch `this video `_.

For an overview of model validation with ConKit, watch this `video `_.

.. CHECKPOINT FOR READTHEDOCS 

Installation & Usage

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Please refer to `ConKit's documentation `_.

Contributing

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There are two ways by which you can contribute to ConKit:

1. Submit any suggestions to the `GitHub Issue Tracker`_, or

2. Fork this repository, commit your changes and submit a pull request.

Found a Bug?

++++++++++++

Please use the `GitHub Issue Tracker`_.

.. _GitHub Issue Tracker: https://github.com/rigdenlab/conkit/issues