https://github.com/rjray/mscs-thesis-project

Evaluating Languages for Bioinformatics: Performance, Expressiveness and Energy
https://github.com/rjray/mscs-thesis-project

bioinformatics c cplusplus energy-consumption energy-efficiency expressiveness performance-analysis perl python rapl rust static-analysis string-matching

Last synced: 26 days ago
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Evaluating Languages for Bioinformatics: Performance, Expressiveness and Energy

• Host: GitHub
• URL: https://github.com/rjray/mscs-thesis-project
• Owner: rjray
• License: mit
• Created: 2022-05-26T21:37:09.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2022-12-08T20:44:55.000Z (about 2 years ago)
• Last Synced: 2024-06-08T06:11:16.186Z (7 months ago)
• Topics: bioinformatics, c, cplusplus, energy-consumption, energy-efficiency, expressiveness, performance-analysis, perl, python, rapl, rust, static-analysis, string-matching
• Language: TeX
• Homepage:
• Size: 9.91 MB
• Stars: 3
• Watchers: 2
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Repository for my MSCS Thesis Work

This repository holds all the files (source code, LaTeX, etc.) for my thesis

project, "Evaluating Languages for Bioinformatics: Performance, Expressiveness

and Energy".

This project performs comparisons of five langauges: C, C++, Perl, Python and

Rust. Measurements are taken on relative performance, expressiveness and energy

usage. A variety of string-matching algorithms are implemented and applied to

simulated DNA sequence data.

The directory `src` contains all the program source code for all languages and

for the harness utility used to run the experiments.

The directory `thesis` contains all the LaTeX source for the thesis, as well as

image files used for some of the diagrams.

In addition, the following files are also present in this top-level directory:

* **compression-20221111.txt** - Snapshot of the compression data

* **cyclomatic-20221111.csv**

* **cyclomatic-20221111.json**

* **cyclomatic-20221111.yaml** - Snapshot of the cyclomatic complexity data

* **draft-20221116.pdf** - The draft as submitted to the thesis committee on 2022-11-16

* **experiments-data-20221111.yml**

* **experiments-data-20221120.yml**

* **experiments-data-20221124.yml** - Preserved data from full experiments runs. The 2022-11-11 data was used for all tables and diagrams in the thesis. The others are subsequent full runs of the experiments for comparison purposes.

* **sloc-20221111.csv** - Snapshot of the SLOC data