https://github.com/robaina/brendapyrser
A Python parser for the BRENDA database
https://github.com/robaina/brendapyrser
biochemistry bioinformatics brenda computational-biology enzyme enzyme-kinetics metabolism python
Last synced: 3 months ago
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A Python parser for the BRENDA database
- Host: GitHub
- URL: https://github.com/robaina/brendapyrser
- Owner: Robaina
- License: apache-2.0
- Created: 2020-09-28T19:51:59.000Z (over 4 years ago)
- Default Branch: master
- Last Pushed: 2023-09-15T17:50:18.000Z (over 1 year ago)
- Last Synced: 2025-03-26T01:36:54.581Z (3 months ago)
- Topics: biochemistry, bioinformatics, brenda, computational-biology, enzyme, enzyme-kinetics, metabolism, python
- Language: Python
- Homepage:
- Size: 702 KB
- Stars: 29
- Watchers: 1
- Forks: 7
- Open Issues: 2
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Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Citation: CITATION.cff
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README

## a Python package to parse and manipulate the BRENDA database[](https://github.com/Robaina/BRENDApyrser/actions/workflows/tests.yml)
[](https://codecov.io/gh/Robaina/BRENDApyrser)


[](https://github.com/Robaina/BRENDApyrser/blob/master/LICENSE)

[](https://zenodo.org/badge/latestdoi/299416438)## What is Brendapyrser?
This project provides python classes and functions to parse the text file containing the entire BRENDA enzyme database (https://www.brenda-enzymes.org)This is an ongoing project!
## Installation
1. ```pip install brendapyrser```or
2. Git clone project to local directory.
In terminal navigate to directory and enter: ```python setup.py install```
## Usage
Due to BRENDA's license, BRENDA's database cannot be downloaded directly by the parser, instead, the user is asked to download the database as a text file after accepting usage conditions [here](https://www.brenda-enzymes.org/download.php).
You can find a jupyter notebook with usage examples [here](docs/examples.ipynb).
## Contribute
Contributions are always more than welcome! Feel free to fork, make changes and pull requests. If you don't know where to start, you can always browse open issues. Thanks!
## Citation
If you use this software, please cite it as below:
Robaina-Estévez, S. (2022). BRENDApyrser: a Python package to parse and manipulate the BRENDA database (Version 0.0.3)[Computer software]. https://doi.org/10.5281/zenodo.7026555