https://github.com/rscherrer/rscherrer
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https://github.com/rscherrer/rscherrer
adaptation color cpp evolution genetics genomics groningen machine-learning mathematica matlab modeling phd programming python rstats speciation statistics
Last synced: about 2 months ago
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- Host: GitHub
- URL: https://github.com/rscherrer/rscherrer
- Owner: rscherrer
- Created: 2021-04-29T21:52:28.000Z (about 5 years ago)
- Default Branch: main
- Last Pushed: 2024-03-18T15:51:59.000Z (over 2 years ago)
- Last Synced: 2025-07-08T13:07:30.328Z (12 months ago)
- Topics: adaptation, color, cpp, evolution, genetics, genomics, groningen, machine-learning, mathematica, matlab, modeling, phd, programming, python, rstats, speciation, statistics
- Homepage:
- Size: 1.8 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
Hey there!
I am a PhD candidate in **theoretical evolutionary biology** at the University of Groningen, in the Netherlands, where I have also been temporarily a lecturer in evolutionary biology and a scientific programmer.
In my work I make and play with computational models that describe the evolution of species, to help us understand a bit better how biological diversity is generated in the real world.
Enjoy my code!
Cheers, Raph
[
](https://cplusplus.com) [
](https://www.python.org) [
](https://r-project.org) [
](https://www.wolfram.com/mathematica/) [
](https://www.mathworks.com/products/matlab.html)
P.S. Some repositories below might be private.
### Software
* [archgen](https://github.com/rscherrer/archgen): quantitative genetics dataset simulator
* [binprint](https://github.com/rscherrer/binprint): C++ library to save many binary output files
* [readpars](https://github.com/rscherrer/readpars): C++ library to read parameters from text files
* [readsim](https://github.com/rscherrer/readsim): R package to efficiently read simulation data into R
* [setupp](https://github.com/rscherrer/setupp): Cross-platform, modular C++ configuration setup
* [simarray](https://github.com/rscherrer/simarray): Python script to generate many simulation folders
### Research projects
* [balance](https://github.com/rscherrer/balance): :mortar_board: quantifying the imbalance of phylogenies under protracted speciation
* [boplume](https://github.com/rscherrer/boplume): :mortar_board: tempo and mode of plumage color evolution in birds-of-paradise
* [brachypode](https://github.com/rscherrer/brachypode): :mortar_board: model of climate adaptation in a patchy landscape
* [coral-networks](https://github.com/rscherrer/coral-networks): :handshake: analysis of resilience in symbiont communities on Caribbean coral reefs
* [DAISIE2](https://github.com/rscherrer/DAISIE2): :handshake: re-implementing and augmenting a model of phylogenetic island biogeography
* [dewlap](https://github.com/rscherrer/dewlap): :mortar_board: measuring dewlap color differences between habitats in _Anolis sagrei_
* [dominican-lizards](https://github.com/rscherrer/dominican-lizards): :handshake: a study of sexual selection and evolvability in _Anolis_ lizards
* [florida-lizards](https://github.com/rscherrer/florida-lizards): :handshake: a study of urban evolution in _Anolis_ lizards
* [hemigene](https://github.com/rscherrer/hemigene): model to explain the evolution of supergenes and hemizygosity
* [reschoice](https://github.com/rscherrer/reschoice): :mortar_board: model of eco-evolutionary branching under resource choice
* [speciome](https://github.com/rscherrer/speciome): :mortar_board: a model of adaptive speciation with gene networks
:mortar_board: = PhD chapter
:handshake: = collaborative work (not main investigator)
### Find me on
* [ORCiD](https://orcid.org/0000-0002-1447-7630)
* [University of Groningen](https://www.rug.nl/staff/r.scherrer/)
* [ResearchGate](https://www.researchgate.net/profile/Raphael-Scherrer)
* [LinkedIn](https://www.linkedin.com/in/rapha%C3%ABl-scherrer-5817a3bb/)
### Email
* raphael.scherrer@evobio.eu
* r.scherrer@rug.nl