https://github.com/saezlab/lianaplus_manuscript

https://github.com/saezlab/lianaplus_manuscript

Last synced: about 1 year ago
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• Host: GitHub
• URL: https://github.com/saezlab/lianaplus_manuscript
• Owner: saezlab
• License: gpl-3.0
• Created: 2023-03-24T14:34:57.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-07-01T08:08:24.000Z (about 2 years ago)
• Last Synced: 2025-06-14T17:05:19.406Z (about 1 year ago)
• Language: Jupyter Notebook
• Size: 683 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# LIANA+ Manuscript Repository

This repository contains the code and data for the LIANA+ manuscript. 

The repository is organized as follows:

- `data/`: contains the small metadata files used in the manuscript.

- `notebooks/`: contains the notebooks used to generate the figures in the manuscript.

- `environments/`: contains the conda environments used to run the notebooks.

- `generate_source_table.py`: script to compile csvs from figures and supps into Supp Data.

See `notebooks\README.md` for all dataset and analysis descriptions.

## Cite LIANA+:

Dimitrov D., Schäfer P.S.L, Farr E., Rodriguez Mier P., Lobentanzer S., Dugourd A., Tanevski J., Ramirez Flores R.O. and Saez-Rodriguez J. 2023 LIANA+: an all-in-one cell-cell communication framework. BioRxiv. https://www.biorxiv.org/content/10.1101/2023.08.19.553863v1