https://github.com/satijalab/seurat

R toolkit for single cell genomics
https://github.com/satijalab/seurat

cran human-cell-atlas single-cell-genomics single-cell-rna-seq

Last synced: 14 days ago
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R toolkit for single cell genomics

• Host: GitHub
• URL: https://github.com/satijalab/seurat
• Owner: satijalab
• License: other
• Created: 2015-05-20T05:23:02.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2024-10-16T22:31:05.000Z (26 days ago)
• Last Synced: 2024-10-18T18:36:51.956Z (24 days ago)
• Topics: cran, human-cell-atlas, single-cell-genomics, single-cell-rna-seq
• Language: R
• Homepage: http://www.satijalab.org/seurat
• Size: 77.7 MB
• Stars: 2,270
• Watchers: 72
• Forks: 910
• Open Issues: 361
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

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• jimsghstars - satijalab/seurat - R toolkit for single cell genomics (R)

README

        
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[![CRAN Version](https://www.r-pkg.org/badges/version/Seurat)](https://cran.r-project.org/package=Seurat)

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# Seurat v5

Seurat is an R toolkit for single cell genomics, developed and maintained by the Satija Lab at NYGC.

We are excited to release Seurat v5! This updates introduces new functionality for spatial, multimodal, and scalable single-cell analysis.

Seurat v5 is backwards-compatible with previous versions, so that users will continue to be able to re-run existing workflows. 

Instructions, documentation, and tutorials can be found at:

* https://satijalab.org/seurat

Seurat is also hosted on GitHub, you can view and clone the repository at

* https://github.com/satijalab/seurat

Seurat has been successfully installed on Mac OS X, Linux, and Windows, using the devtools package to install directly from GitHub

Improvements and new features will be added on a regular basis, please post on the [github page](https://github.com/satijalab/seurat) with any questions or if you would like to contribute

For a version history/changelog, please see the [NEWS file](https://github.com/satijalab/seurat/blob/master/NEWS.md).