https://github.com/satijalab/seurat

R toolkit for single cell genomics
https://github.com/satijalab/seurat

cran human-cell-atlas single-cell-genomics single-cell-rna-seq

Last synced: about 1 year ago
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R toolkit for single cell genomics

• Host: GitHub
• URL: https://github.com/satijalab/seurat
• Owner: satijalab
• License: other
• Created: 2015-05-20T05:23:02.000Z (about 11 years ago)
• Default Branch: main
• Last Pushed: 2025-04-24T12:52:29.000Z (about 1 year ago)
• Last Synced: 2025-05-08T00:35:22.125Z (about 1 year ago)
• Topics: cran, human-cell-atlas, single-cell-genomics, single-cell-rna-seq
• Language: R
• Homepage: http://www.satijalab.org/seurat
• Size: 77.9 MB
• Stars: 2,428
• Watchers: 74
• Forks: 946
• Open Issues: 476
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

Awesome Lists containing this project

• jimsghstars - satijalab/seurat - R toolkit for single cell genomics (R)
• Road2R - Seurat - Seurat is an R toolkit for single cell genomics, developed and maintained by the Satija Lab at NYGC. (Table of Contents / Single-cell)
• awesome-single-cell - Seurat - [R] - It contains easy-to-use implementations of commonly used analytical techniques, including the identification of highly variable genes, dimensionality reduction (PCA, ICA, t-SNE), standard unsupervised clustering algorithms (density clustering, hierarchical clustering, k-means), and the discovery of differentially expressed genes and markers. (Software packages / RNA-seq)

README

          
[![CRAN Version](https://www.r-pkg.org/badges/version/Seurat)](https://cran.r-project.org/package=Seurat)

[![CRAN Downloads](https://cranlogs.r-pkg.org/badges/Seurat)](https://cran.r-project.org/package=Seurat)

# Seurat v5

Seurat is an R toolkit for single cell genomics, developed and maintained by the Satija Lab at NYGC.

We are excited to release Seurat v5! This updates introduces new functionality for spatial, multimodal, and scalable single-cell analysis.

Seurat v5 is backwards-compatible with previous versions, so that users will continue to be able to re-run existing workflows. 

Instructions, documentation, and tutorials can be found at:

* https://satijalab.org/seurat

Seurat is also hosted on GitHub, you can view and clone the repository at

* https://github.com/satijalab/seurat

Seurat has been successfully installed on Mac OS X, Linux, and Windows, using the devtools package to install directly from GitHub

Improvements and new features will be added on a regular basis, please post on the [github page](https://github.com/satijalab/seurat) with any questions or if you would like to contribute

For a version history/changelog, please see the [NEWS file](https://github.com/satijalab/seurat/blob/master/NEWS.md).