https://github.com/sbesson/photoactivation_analysis

MATLAB scripts used for photoactivation analysis in Young et. al 2014
https://github.com/sbesson/photoactivation_analysis

analysis matlab omero photoactivation

Last synced: about 1 month ago
JSON representation

MATLAB scripts used for photoactivation analysis in Young et. al 2014

• Host: GitHub
• URL: https://github.com/sbesson/photoactivation_analysis
• Owner: sbesson
• License: gpl-3.0
• Created: 2019-04-04T06:22:39.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2019-04-04T06:26:47.000Z (almost 6 years ago)
• Last Synced: 2024-10-30T10:47:29.860Z (3 months ago)
• Topics: analysis, matlab, omero, photoactivation
• Language: MATLAB
• Homepage: https://doi.org/10.1242/bio.201410363
• Size: 118 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

Awesome Lists containing this project

README

        
## README

This bundle contains the series of scripts used to produce the analysis

of [Young et al](https://doi.org/10.1242/bio.201410363). All scripts are

written under MATLAB and have been tested using MATLAB R2013b. The following

MATLAB toolboxes are required to run all the components:

- Curve Fitting Toolbox

- Image Processing Toolbox

- Mapping Toolbox

- Optimization Toolbox

- Statistics Toolbox

The bundle contains 3 directories:

-   the [spindleAnalysis](spindleAnalysis) directory contains the scripts used

    to align the spindle width/length measurements. The startup script is

    called [runSpindleAnalysis.m](spindleAnalysis/runSpindleAnalysis.m) and

    looks for XLS files containing time-series of the spindle lengths.

-   the [photoactivation](photoactivation) directory contains the scripts used

    to process the spindle photoactivation experiments into flux/turnover measurements. It assumes the data has been imported onto an OMERO server and makes extensive use of the OMERO.matlab toolbox 

-   the [extern](extern) directory contains third-party MATLAB functions under

    GPL-license used for running the code.